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Microbiota include bacteria, archaea, protists, fungi, and viruses, [2] [3] and have been found to be crucial for immunologic, hormonal, and metabolic homeostasis of their host. The term microbiome describes either the collective genomes of the microbes that reside in an ecological niche or else the microbes themselves. [4] [5] [6]
Therefore, all mobile genetic elements, such as phages, viruses, and "relic" and extracellular DNA, should be included in the term microbiome, but are not a part of microbiota. The term microbiome is also sometimes confused with the metagenome. Metagenome is, however, clearly defined as a collection of genomes and genes from the members of a ...
Graphic depicting the human skin microbiota, with relative prevalences of various classes of bacteria. The human microbiome is the aggregate of all microbiota that reside on or within human tissues and biofluids along with the corresponding anatomical sites in which they reside, [1] [2] including the gastrointestinal tract, skin, mammary glands, seminal fluid, uterus, ovarian follicles, lung ...
Photomicrograph of the microflora Streptococcus pyogenes bacteria, 900x mag. In microbiology , collective bacteria and other microorganisms in a host are historically known as flora . Although microflora is commonly used, the term microbiota is becoming more common as microflora is a misnomer.
Gut microbiota, gut microbiome, or gut flora are the microorganisms, including bacteria, archaea, fungi, and viruses, that live in the digestive tracts of animals. [1] [2] The gastrointestinal metagenome is the aggregate of all the genomes of the gut microbiota. [3] [4] The gut is the main location of the human microbiome. [5]
The initial acquisition of microbiota is the formation of an organism's microbiota immediately before and after birth. The microbiota (also called flora) are all the microorganisms including bacteria, archaea and fungi that colonize the organism. The microbiome is another term for microbiota or can refer to the collected genomes.
S. mutans is the main component of the oral microbiota. [15] A healthy oral microbiome decreases oral infections and promotes a healthy gut microbiome. However, when disturbed, it can lead to gum inflammations and bad breath. [16] Dental plaque is formed when oral microorganisms form biofilms on the surfaces of teeth.
The plant microbiome, also known as the phytomicrobiome, plays roles in plant health and productivity and has received significant attention in recent years. [ 1 ] [ 2 ] The microbiome has been defined as "a characteristic microbial community occupying a reasonably well-defined habitat which has distinct physio-chemical properties.