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Molecular Distance Measures—a tutorial on how to calculate RMSD; RMSD—another tutorial on how to calculate RMSD with example code; Secondary Structure Matching (SSM) — a tool for protein structure comparison. Uses RMSD. GDT, LCS and LGA — different structure comparison measures. Description and services.
In fluid dynamics, normalized root mean square deviation (NRMSD), coefficient of variation (CV), and percent RMS are used to quantify the uniformity of flow behavior such as velocity profile, temperature distribution, or gas species concentration. The value is compared to industry standards to optimize the design of flow and thermal equipment ...
Umple code embedding one or more of Java, Python, C++, PHP or Ruby Pure Umple code describing associations, patterns, state machines, etc. Java, Python, C++, PHP, Ruby, ECcore, Umlet, Yuml, Textuml, JSON, Papyrus XMI, USE, NuXMV, Alloy Velocity apache: Java Passive [2] Tier Templates Java driver code Any text Yii2 Gii: PHP Active Tier
Let P and Q be two sets, each containing N points in .We want to find the transformation from Q to P.For simplicity, we will consider the three-dimensional case (=).The sets P and Q can each be represented by N × 3 matrices with the first row containing the coordinates of the first point, the second row containing the coordinates of the second point, and so on, as shown in this matrix:
Users can run their own Tcl and Python scripts within VMD as it includes embedded Tcl and Python interpreters. VMD runs on Unix, Apple Mac macOS, and Microsoft Windows. [3] VMD is available to non-commercial users under a distribution-specific license which permits both use of the program and modification of its source code, at no charge. [4]
The TM-score is intended as a more accurate measure of the global similarity of full-length protein structures than the often used RMSD measure. The TM-score indicates the similarity between two structures by a score between ( 0 , 1 ] {\displaystyle (0,1]} , where 1 indicates a perfect match between two structures (thus the higher the better ...
C/C++, C#, D, IDL, Fortran, Java, PHP, Python Any 1997/10/26 1.9.1 GPL Epydoc: Edward Loper Text Python Any 2002/01/— 3.0 (2008) MIT: fpdoc (Free Pascal Documentation Generator) Sebastian Guenther and Free Pascal Core Text (Object)Pascal/Delphi FPC tier 1 targets 2005 3.2.2 GPL reusable parts are GPL with static linking exception Haddock ...
The RMS value of a set of values (or a continuous-time waveform) is the square root of the arithmetic mean of the squares of the values, or the square of the function that defines the continuous waveform.