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For example, one pathway may be responsible for the synthesis of a particular amino acid, but the breakdown of that amino acid may occur via a separate and distinct pathway. One example of an exception to this "rule" is the metabolism of glucose .
A metabolic network is the complete set of metabolic and physical processes that determine the physiological and biochemical properties of a cell. As such, these networks comprise the chemical reactions of metabolism , the metabolic pathways , as well as the regulatory interactions that guide these reactions.
Metabolism (/ m ə ˈ t æ b ə l ɪ z ə m /, from Greek: μεταβολή metabolē, "change") is the set of life-sustaining chemical reactions in organisms.The three main functions of metabolism are: the conversion of the energy in food to energy available to run cellular processes; the conversion of food to building blocks of proteins, lipids, nucleic acids, and some carbohydrates; and the ...
Glycolysis is the metabolic pathway that converts glucose (C 6 H 12 O 6) into pyruvate and, in most organisms, occurs in the liquid part of cells (the cytosol). The free energy released in this process is used to form the high-energy molecules adenosine triphosphate (ATP) and reduced nicotinamide adenine dinucleotide (NADH). [ 1 ]
For example, EcoCyc is a highly detailed bioinformatics database on the genome and metabolic reconstruction of Escherichia coli, including thorough descriptions of E. coli signaling pathways and regulatory network. The EcoCyc database can serve as a paradigm and model for any reconstruction.
Anabolism (/ ə ˈ n æ b ə l ɪ z ə m /) is the set of metabolic pathways that construct macromolecules like DNA or RNA from smaller units. [1] [2] These reactions require energy, known also as an endergonic process. [3] Anabolism is the building-up aspect of metabolism, whereas catabolism is the breaking-down aspect.
linear pathways only have one enzymatic reaction producing a species and one enzymatic reaction consuming the species. Branched pathways are present in numerous metabolic reactions, including glycolysis, the synthesis of lysine, glutamine, and penicillin, [1] and in the production of the aromatic amino acids. [2] Simple Branch Pathway.
Catabolism (/ k ə ˈ t æ b ə l ɪ z ə m /) is the set of metabolic pathways that breaks down molecules into smaller units that are either oxidized to release energy or used in other anabolic reactions. [1]