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The figure on the right shows a plot of this function: a line giving the predicted ^ versus x, with the original values of y shown as red dots. The data at the extremes of x indicates that the relationship between y and x may be non-linear (look at the red dots relative to the regression line at low and high values of x). We thus turn to MARS ...
By minimizing these systematic variations, true biological differences can be found. To determine whether normalization is needed, one can plot Cy5 (R) intensities against Cy3 (G) intensities and see whether the slope of the line is around 1. An improved method, which is basically a scaled, 45 degree rotation of the R vs. G plot is an MA-plot. [4]
Figure 2. Box-plot with whiskers from minimum to maximum Figure 3. Same box-plot with whiskers drawn within the 1.5 IQR value. A boxplot is a standardized way of displaying the dataset based on the five-number summary: the minimum, the maximum, the sample median, and the first and third quartiles.
When an inline formula is long enough, it can be helpful to allow it to break across lines. Whether using LaTeX or templates, split the formula at each acceptable breakpoint into separate <math> tags or {} templates with any binary relations or operators and intermediate whitespace included at the trailing rather than leading end of a part.
A volcano plot is constructed by plotting the negative logarithm of the p value on the y axis (usually base 10). This results in data points with low p values (highly significant) appearing toward the top of the plot. The x axis is the logarithm of the fold change between the two conditions. The logarithm of the fold change is used so that ...
Pearson's correlation coefficient is the covariance of the two variables divided by the product of their standard deviations. The form of the definition involves a "product moment", that is, the mean (the first moment about the origin) of the product of the mean-adjusted random variables; hence the modifier product-moment in the name.
The radar chart is a chart and/or plot that consists of a sequence of equi-angular spokes, called radii, with each spoke representing one of the variables. The data length of a spoke is proportional to the magnitude of the variable for the data point relative to the maximum magnitude of the variable across all data points.
In MATLAB we can use Empirical cumulative distribution function (cdf) plot; jmp from SAS, the CDF plot creates a plot of the empirical cumulative distribution function. Minitab, create an Empirical CDF; Mathwave, we can fit probability distribution to our data; Dataplot, we can plot Empirical CDF plot; Scipy, we can use scipy.stats.ecdf