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SplicePlot is a tool for visualizing alternative splicing and the effects of splicing quantitative trait loci (sQTLs) from RNA-seq data. It provides a simple command line interface for drawing sashimi plots, hive plots, and structure plots of alternative splicing events from .bam, .gtf, and .vcf files.
It forms the foundation for Autopsy, a better known tool that is essentially a graphical user interface to the command line utilities bundled with The Sleuth Kit. [2] [3] The collection is open source and protected by the GPL, the CPL and the IPL. The software is under active development and it is supported by a team of developers.
When sampling is performed without removing this part of the signal, it causes undesirable artifacts such as black-and-white noise. In signal acquisition and audio, anti-aliasing is often done using an analog anti-aliasing filter to remove the out-of-band component of the input signal prior to sampling with an analog-to-digital converter.
The Android software development kit (SDK) includes a comprehensive set of development tools. The Android SDK Platform Tools are a separately downloadable subset of the full SDK, consisting of command-line tools such as adb and fastboot. [4] The Android Debug Bridge (ADB) is a tool to run commands on a connected Android device.
Fraunhofer FDK AAC is an open-source [5] library for encoding and decoding digital audio in the Advanced Audio Coding (AAC) format. Fraunhofer IIS developed this library for Android 4.1 . [ 6 ] [ 7 ] It supports several Audio Object Types including MPEG-2 and MPEG-4 AAC LC, HE-AAC (AAC LC + SBR ), HE-AACv2 (LC + SBR + PS ) as well AAC-LD (low ...
Lossy data compression involves discarding some of the media's data so that it becomes small enough to be stored within the desired disk space or transmitted (streamed) within the available bandwidth (known as the data rate or bit rate). If the compressor cannot store enough data in the compressed version, the result is a loss of quality, or ...
Sonic artifact, in sound and music production, sonic material that is accidental or unwanted, resulting from the editing of another sound. Visual artifact, in imaging, any unwanted visual alteration introduced by the imaging equipment. Compression artifact, in computer graphics, distortion of media by the data compression.
Galaxy is extensible, as new command line tools can be integrated and shared within the Galaxy ToolShed. [25] An example of extending Galaxy is Galaxy-P from the University of Minnesota Supercomputing Institute, which is customized as a data analysis platform for mass spectrometry-based proteomics. [26]