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This list of protein subcellular localisation prediction tools includes software, databases, and web services that are used for protein subcellular localization prediction. Some tools are included that are commonly used to infer location through predicted structural properties, such as signal peptide or transmembrane helices , and these tools ...
The script editor in Fiji supports rapid prototyping of scripts and ImageJ plugins, making Fiji a powerful tool to develop new image processing algorithms and explore new image processing techniques with ImageJ. [16] [17]
Eclipse ImageJ Plugin - An plugin which integrates ImageJ in a flexible tabbed view interface and also offers a powerful macro editor with a debugging interface. [14] Bitplane - producers of image processing software with ImageJ compatibility; CellProfiler, a software package for high-throughput image analysis by interactive construction of ...
Colocalization is used in real-time single-molecule fluorescence microscopy to detect interactions between fluorescently labeled molecular species. In this case, one species (e.g. a DNA molecule) is typically immobilized on the imaging surface, and the other species (e.g. a DNA-binding protein) is supplied to the solution.
The gene finder is based on a hidden Markov model (HMM) that is automatically estimated for a new genome. Prokaryotes [8] [9] EuGene: Integrative gene finding: Prokaryotes, Eukaryotes [10] [11] FGENESH: HMM-based gene structure prediction: multiple genes, both chains: Eukaryotes [12] FrameD: Find genes and frameshift in G+C rich prokaryote ...
The Colocalization Benchmark Source (CBS) is a free collection of downloadable images to test and validate the degree of colocalization of markers in any fluorescence microscopy studies. Colocalization is a visual phenomenon when two molecules of interest are associated with the same structures in the cells and potentially share common ...
Implementation of Otsu's thresholding method as GIMP-plugin using Script-Fu (a Scheme-based language) Lecture notes on thresholding – covers the Otsu method; A plugin for ImageJ using Otsu's method to do the threshold; A full explanation of Otsu's method with a working example and Java implementation; Implementation of Otsu's method in ITK
This list of phylogenetics software is a compilation of computational phylogenetics software used to produce phylogenetic trees. Such tools are commonly used in comparative genomics , cladistics , and bioinformatics .