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  2. Single-cell sequencing - Wikipedia

    en.wikipedia.org/wiki/Single-cell_sequencing

    Single-cell DNA genome sequencing involves isolating a single cell, amplifying the whole genome or region of interest, constructing sequencing libraries, and then applying next-generation DNA sequencing (for example Illumina, Ion Torrent). Single-cell DNA sequencing has been widely applied in mammalian systems to study normal physiology and ...

  3. Single-cell analysis - Wikipedia

    en.wikipedia.org/wiki/Single-cell_analysis

    This single cell shows the process of the central dogma of molecular biology, which are all steps researchers are interested to quantify (DNA, RNA, and Protein).. In cell biology, single-cell analysis and subcellular analysis [1] refer to the study of genomics, transcriptomics, proteomics, metabolomics, and cellcell interactions at the level of an individual cell, as opposed to more ...

  4. List of single cell omics methods - Wikipedia

    en.wikipedia.org/wiki/List_of_single_cell_omics...

    A list of more than 100 different single cell sequencing (omics) methods have been published. [1] The large majority of methods are paired with short-read sequencing technologies, although some of them are compatible with long read sequencing.

  5. Single-molecule real-time sequencing - Wikipedia

    en.wikipedia.org/wiki/Single-molecule_real-time...

    The DNA sequencing is done on a chip that contains many ZMWs. Inside each ZMW, a single active DNA polymerase with a single molecule of single stranded DNA template is immobilized to the bottom through which light can penetrate and create a visualization chamber that allows monitoring of the activity of the DNA polymerase at a single molecule level.

  6. Single-cell transcriptomics - Wikipedia

    en.wikipedia.org/wiki/Single-cell_transcriptomics

    As a result of the aforementioned properties of single-cell transcriptomic data, batch correction methods developed for bulk sequencing data were observed to perform poorly. Consequently, researchers developed statistical methods to correct for batch effects that are robust to the properties of single-cell transcriptomic data to integrate data ...

  7. CITE-Seq - Wikipedia

    en.wikipedia.org/wiki/CITE-Seq

    A unique barcode sequence used on the cell hashing antibody can be designed to be different from an antibody barcode present on the ADTs used in CITE-seq. This makes it possible to couple cell hashing with CITE-seq on a single sequencing run. [12] Cell hashing allows super-loading of the scRNA-seq platform, resulting in a lower cost of sequencing.

  8. List of RNA-Seq bioinformatics tools - Wikipedia

    en.wikipedia.org/wiki/List_of_RNA-Seq...

    SCell [124] integrated analysis of single-cell RNA-seq data. Seurat [125] [126] R package designed for QC, analysis, and exploration of single-cell RNA-seq data. Sincell [127] an R/Bioconductor package for statistical assessment of cell-state hierarchies from single-cell RNA-seq. SINCERA [128] A Pipeline for Single-Cell RNA-Seq Profiling Analysis.

  9. Single-cell DNA template strand sequencing - Wikipedia

    en.wikipedia.org/wiki/Single-cell_DNA_template...

    Single-cell DNA template strand sequencing, or Strand-seq, is a technique for the selective sequencing of a daughter cell's parental template strands. [1] This technique offers a wide variety of applications, including the identification of sister chromatid exchanges in the parental cell prior to segregation, the assessment of non-random segregation of sister chromatids, the identification of ...

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