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This list of protein subcellular localisation prediction tools includes software, databases, and web services that are used for protein subcellular localization prediction. Some tools are included that are commonly used to infer location through predicted structural properties, such as signal peptide or transmembrane helices , and these tools ...
Constituent amino-acids can be analyzed to predict secondary, tertiary and quaternary protein structure. This list of protein structure prediction software summarizes notable used software tools in protein structure prediction, including homology modeling, protein threading, ab initio methods, secondary structure prediction, and transmembrane helix and signal peptide prediction.
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Consensus-based prediction of residue disorder Eight separate disorder predictors from various groups No No SPOT-Disorder [8] 2017 Outputs the probability of each residue in a protein sequence of being disordered or ordered. A deep recurrent neural network architecture using Long Short-Term Memory (LSTM) cells. Yes No Disopred2 [9] 2004-2015
Membranome; Content; Description: Data about single-span (bitopic) transmembrane proteins in genomes: Data types captured: All bitopic proteins from six model organisms: Organisms: Homo sapiens, Arabidopsis thaliana, Dictyostelium discoideum, Saccharomyces cerevisiae, Escherichia coli, Methanococcus jannaschii
The TMEM229B gene is located on the sense strand (-) of chromosome 14 at location 14q24.1 and spans the chromosomal locus 67,936,983—67,982,021. [8] Covering a total of 45,038 base pairs (bp) along the chromosome, the TMEM229B gene has a total of 3 exons in its primary unspliced transcript mRNA of 4,068 bp.
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A hydrophilicity plot is a quantitative analysis of the degree of hydrophobicity or hydrophilicity of amino acids of a protein.It is used to characterize or identify possible structure or domains of a protein.