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ggplot2 is an open-source data visualization package for the statistical programming language R.Created by Hadley Wickham in 2005, ggplot2 is an implementation of Leland Wilkinson's Grammar of Graphics—a general scheme for data visualization which breaks up graphs into semantic components such as scales and layers. ggplot2 can serve as a replacement for the base graphics in R and contains a ...
UpSet plots became popular as they became available as an R-library based on ggplot2, [3] and were subsequently re-implemented in various programming languages, such as Python, and others. [4] As of January 2024, UpSetR has been downloaded from CRAN more than 1.5 million times, although it was last updated 5 years ago. [5]
There is also an active R community around the tidyverse. For example, there is the TidyTuesday social data project organised by the Data Science Learning Community (DSLC), [ 16 ] where varied real-world datasets are released each week for the community to participate, share, practice, and make learning to work with data easier. [ 17 ]
R is a programming language for statistical computing and data visualization. It has been adopted in the fields of data mining, bioinformatics and data analysis. [9] The core R language is augmented by a large number of extension packages, containing reusable code, documentation, and sample data. R software is open-source and free software.
R: TraMineR [5] with its extension TraMineRextras [6] is probably the most comprehensive SA toolkit; ggseqplot, [154] provides ggplot versions of most TraMineR plots; seqhandbook [155] provides several specific tools such as heat maps of sequence data and the GIMSA method for measuring dissimilarities between multidomain sequences; seqimpute ...
Packages like ggplot2 in R and Matplotlib in Python are often used to create the visuals. The table can also be annotated using a reference annotation file, usually in GTF or GFF format to provide more context about the genes, such as the chromosome name, strand, and start and positions, and aid result interpretation.
From January 2008 to April 2011, if you bought shares in companies when William C. Steere, Jr. joined the board, and sold them when he left, you would have a -2.9 percent return on your investment, compared to a -7.3 percent return from the S&P 500.
A variation of the Theil–Sen estimator, the repeated median regression of Siegel (1982), determines for each sample point (x i, y i), the median m i of the slopes (y j − y i)/(x j − x i) of lines through that point, and then determines the overall estimator as the median of these medians.