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Automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences Eukaryotes [1] FragGeneScan: Predicting genes in complete genomes and sequencing Reads: Prokaryotes, Metagenomes [2] ATGpr: Identifies translational initiation sites in cDNA sequences: Human [3] Prodigal
GeneNetwork is a combined database and open-source bioinformatics data analysis software resource for systems genetics. [1] This resource is used to study gene regulatory networks that link DNA sequence differences to corresponding differences in gene and protein expression and to variation in traits such as health and disease risk.
Salmon is a software tool for computing transcript abundance from RNA-seq data using either an alignment-free (based directly on the raw reads) or an alignment-based (based on pre-computed alignments) approach. It uses an online stochastic optimization approach to maximize the likelihood of the transcript abundances under the observed data.
The sequences are then divided back into their original 11 bp tags using computer software in a process called deconvolution. [21] If a high-quality reference genome is available, these tags may be matched to their corresponding gene in the genome.
KEGG (Kyoto Encyclopedia of Genes and Genomes) is a collection of databases dealing with genomes, biological pathways, diseases, drugs, and chemical substances.KEGG is utilized for bioinformatics research and education, including data analysis in genomics, metagenomics, metabolomics and other omics studies, modeling and simulation in systems biology, and translational research in drug development.
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It enables users to convert videos into formats like AVI, ASF, WMV, MP4, 3GP, etc. [1] [5] It offers the ability to convert DVDs into various formats. [6] It provides tools for adjusting colour and filter options. [7] [8] Prism Video File Converter provides several customizable options for tweaking the output files during the conversion process.
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