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To display molecules with Jmol, your browser needs to be Java enabled. Two examples of Jmol images in a wiki are here and here. These use Jmol to show medium sized molecules with buttons to control the rotation of the molecules. The right mouse button opens a Jmol menu while the left mouse button can be used to move the image.
An addition that I think would be useful for the Wiki: rather than directly adding a Jmol applet in a MediaWiki page (which requires loading the applet when viewing the page), I have added the possibility to add a button opening a new window with the Jmol applet in it (the applet will only be loaded for people that want to see the molecule in 3D).
Jmol is computer software for molecular modelling of chemical structures in 3 dimensions. [2] It is an open-source Java viewer for chemical structures in 3D [3]. The name originated from ava (the programming language) + [mol]ecules, and also the mol file format. JSmol is an implementation in JavaScript of the functionality of Jmol. [4]
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Note that the link is labeled "JSmol", but the parameter is |Jmol=. Subcategories. This category has the following 3 subcategories, out of 3 total. C.
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The XYZ file format is a chemical file format.There is no formal standard and several variations exist, but a typical XYZ format specifies the molecule geometry by giving the number of atoms with Cartesian coordinates that will be read on the first line, a comment on the second, and the lines of atomic coordinates in the following lines. [1]