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The estimated cluster configurations can be post-processed in order to identify differentially expressed genes and for generating gene- and sample-wise dendrograms and heatmaps. [60] DiffSplice is a method for differential expression detection and visualization, not dependent on gene annotations. This method is supported on identification of ...
A worst case example of an arbitrarily badly connected community is a internally disconnected community. An internally disconnected community arises through the Louvain algorithm when a node that had been acting as a "bridge" between two groups of nodes in its community is moved to a new community, leaving the old one disconnected.
Cluster analysis or clustering is the task of grouping a set of objects in such a way that objects in the same group (called a cluster) are more similar (in some specific sense defined by the analyst) to each other than to those in other groups (clusters).
For a clustering example, suppose that five taxa (to ) have been clustered by UPGMA based on a matrix of genetic distances.The hierarchical clustering dendrogram would show a column of five nodes representing the initial data (here individual taxa), and the remaining nodes represent the clusters to which the data belong, with the arrows representing the distance (dissimilarity).
In graph theory, a clustering coefficient is a measure of the degree to which nodes in a graph tend to cluster together. Evidence suggests that in most real-world networks, and in particular social networks, nodes tend to create tightly knit groups characterised by a relatively high density of ties; this likelihood tends to be greater than the average probability of a tie randomly established ...
Mashaghi A. et al., for example, demonstrated that a transformation which converts random graphs to their edge-dual graphs (or line graphs) produces an ensemble of graphs with nearly the same degree distribution, but with degree correlations and a significantly higher clustering coefficient. Scale free graphs, as such, remain scale free under ...
Medoid-based clustering can be applied to group text data based on similar sentiment patterns. By analyzing the medoid of each cluster, researchers can gain insights into the predominant sentiment of the cluster, helping in tasks such as opinion mining, customer feedback analysis, and social media monitoring. [12]
Ward's minimum variance method can be defined and implemented recursively by a Lance–Williams algorithm. The Lance–Williams algorithms are an infinite family of agglomerative hierarchical clustering algorithms which are represented by a recursive formula for updating cluster distances at each step (each time a pair of clusters is merged).