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The longest alternating subsequence problem has also been studied in the setting of online algorithms, in which the elements of are presented in an online fashion, and a decision maker needs to decide whether to include or exclude each element at the time it is first presented, without any knowledge of the elements that will be presented in the future, and without the possibility of recalling ...
In computer science, the Hunt–Szymanski algorithm, [1] [2] also known as Hunt–McIlroy algorithm, is a solution to the longest common subsequence problem.It was one of the first non-heuristic algorithms used in diff which compares a pair of files each represented as a sequence of lines.
The final result is that the last cell contains all the longest subsequences common to (AGCAT) and (GAC); these are (AC), (GC), and (GA). The table also shows the longest common subsequences for every possible pair of prefixes. For example, for (AGC) and (GA), the longest common subsequence are (A) and (G).
The longest common substrings of a set of strings can be found by building a generalized suffix tree for the strings, and then finding the deepest internal nodes which have leaf nodes from all the strings in the subtree below it. The figure on the right is the suffix tree for the strings "ABAB", "BABA" and "ABBA", padded with unique string ...
In computer programming and computer science, "maximal munch" or "longest match" is the principle that when creating some construct, as much of the available input as possible should be consumed. The earliest known use of this term is by R.G.G. Cattell in his PhD thesis [ 1 ] on automatic derivation of code generators for compilers .
Take for example X = AGT and Y = ATC. LCS(Xm – 1, Y) = A and LCS(X, Yn – 1) = AT. Clearly AT is the longest common subsequence, not A. Thus, LCS(X, Y) = the longest sequences of LCS(Xm – 1, Y) or LCS(X, Yn – 1). The current example of the second property is at best misleading. Shannon Pattison 20:31, 19 August 2009 (UTC)notpattison
One application of the algorithm is finding sequence alignments of DNA or protein sequences. It is also a space-efficient way to calculate the longest common subsequence between two sets of data such as with the common diff tool. The Hirschberg algorithm can be derived from the Needleman–Wunsch algorithm by observing that: [3]
The longest increasing subsequence problem is closely related to the longest common subsequence problem, which has a quadratic time dynamic programming solution: the longest increasing subsequence of a sequence is the longest common subsequence of and , where is the result of sorting.