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The FMRIB Software Library, abbreviated FSL, is a software library containing image analysis and statistical tools for functional, structural and diffusion MRI brain imaging data. FSL is available as both precompiled binaries and source code for Apple and PC ( Linux ) computers.
Medical image segmentation is made difficult by low contrast, noise, and other imaging ambiguities. Although there are many computer vision techniques for image segmentation, some have been adapted specifically for medical image computing. Below is a sampling of techniques within this field; the implementation relies on the expertise that ...
Neuroimaging software is used to study the structure and function of the brain. To see an NIH Blueprint for Neuroscience Research funded clearinghouse of many of these software applications, as well as hardware, etc. go to the NITRC web site. 3D Slicer Extensible, free open source multi-purpose software for visualization and analysis.
ITK is an open-source software toolkit for performing registration and segmentation. Segmentation is the process of identifying and classifying data found in a digitally sampled representation. Typically the sampled representation is an image acquired from such medical instrumentation as CT or MRI scanners. Registration is the task of aligning ...
Standard brain maps such as the Talairach-Tournoux or templates from the Montréal Neurological Institute (MNI) allow researchers from across the world to compare their results. Images can be smoothed to make the data less noisy (similar to the 'blur' effect used in some image-editing software) by which voxels are averaged with their neighbours ...
A number of online neuroscience databases are available which provide information regarding gene expression, neurons, macroscopic brain structure, and neurological or psychiatric disorders. Some databases contain descriptive and numerical data, some to brain function, others offer access to 'raw' imaging data, such as postmortem brain sections ...
Segmentation in the hind-brain and paraxial mesoderm is highly regulated by the expression of the Hox gene. Hox genes encode helix-turn-helix transcription factors and play the major role in specifying the positional identities for tissues along the anterior-posterior axis (A-P axis) during the developmental phase.
The world record for the spatial resolution of a whole-brain MRI image was a 100-micrometer volume (image) achieved in 2019. The sample acquisition took about 100 hours. [ 2 ] The spatial world record of a whole human brain of any method was an X-ray tomography scan performing at the ESRF (European synchrotron radiation facility), which had a ...