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The dbSNP can be searched using the Entrez SNP search tool. A variety of queries can be used for searching: an ss number ID, a refSNP number ID, a gene name, an experimental method, a population class, a population detail, a publication, a marker, an allele, a chromosome, a base position, a heterozygosity range, or a build number.
An accession number, in bioinformatics, is a unique identifier given to a DNA or protein sequence record to allow for tracking of different versions of that sequence record and the associated sequence over time in a single data repository.
The Entrez front page provides, by default, access to the global query. All databases indexed by Entrez can be searched via a single query string, supporting Boolean operators and search term tags to limit parts of the search statement to particular fields. This returns a unified results page, that shows the number of hits for the search in ...
The NCBI assigns a unique identifier (taxonomy ID number) to each species of organism. [5] The NCBI has software tools that are available through web browsers or by FTP. For example, BLAST is a sequence similarity searching program. BLAST can do sequence comparisons against the GenBank DNA database in less than 15 seconds.
Accession number may refer to: Accession number (bioinformatics) , a unique identifier given to a biological polymer sequence (DNA, protein) when it is submitted to a sequence database Accession number (cultural property) , a unique identifier assigned to each acquisition of a library or museum
Label in a gallery indicating the object's accession number. In galleries, libraries, archives, and museums, an accession number is a unique identifier assigned to, and achieving initial control of, each acquisition. Assignment of accession numbers typically occurs at the point of accessioning or cataloging.
For each entry, cross-references are maintained to EnsEMBL, dbSNP, Entrez Gene, the NCBI Taxonomy database and PubMed. The information within ORegAnno is regularly mapped and provided as a UCSC Genome Browser track. Furthermore, each entry is associated with its experimental evidence, embedded as an Evidence Ontology within ORegAnno. This ...
In the case of dbSNP identifiers, providing to the convert2annovar.pl script a list of identifiers (e.g. rs41534544, rs4308095, rs12345678) in a text file along with the reference genome of interest as a parameter, ANNOVAR will output an ANNOVAR input file with the genomic coordinate fields for those variants which can then be used for ...