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  2. Maximum weight matching - Wikipedia

    en.wikipedia.org/wiki/Maximum_weight_matching

    In computer science and graph theory, the maximum weight matching problem is the problem of finding, in a weighted graph, a matching in which the sum of weights is maximized. A special case of it is the assignment problem , in which the input is restricted to be a bipartite graph , and the matching constrained to be have cardinality that of the ...

  3. Widest path problem - Wikipedia

    en.wikipedia.org/wiki/Widest_path_problem

    In this graph, the widest path from Maldon to Feering has bandwidth 29, and passes through Clacton, Tiptree, Harwich, and Blaxhall. In graph algorithms, the widest path problem is the problem of finding a path between two designated vertices in a weighted graph, maximizing the weight of the minimum-weight edge in the path.

  4. Blossom algorithm - Wikipedia

    en.wikipedia.org/wiki/Blossom_algorithm

    The matching problem can be generalized by assigning weights to edges in G and asking for a set M that produces a matching of maximum (minimum) total weight: this is the maximum weight matching problem. This problem can be solved by a combinatorial algorithm that uses the unweighted Edmonds's algorithm as a subroutine. [6]

  5. Minimum bottleneck spanning tree - Wikipedia

    en.wikipedia.org/wiki/Minimum_bottleneck...

    Let B(T i) be the maximum weight edge for any spanning tree T i. We define subset of minimum bottleneck spanning trees S′ such that for every T j ∈ S′ and T k ∈ S we have B(T j) ≤ B(T k) for all i and k. [2] The graph on the right is an example of MBST, the red edges in the graph form a MBST of G(V, E).

  6. Clique problem - Wikipedia

    en.wikipedia.org/wiki/Clique_problem

    It is possible to find the maximum clique, or the clique number, of an arbitrary n-vertex graph in time O (3 n/3) = O (1.4422 n) by using one of the algorithms described above to list all maximal cliques in the graph and returning the largest one. However, for this variant of the clique problem better worst-case time bounds are possible.

  7. RNA-Seq - Wikipedia

    en.wikipedia.org/wiki/RNA-Seq

    Gene length: Longer genes will have more fragments/reads/counts than shorter genes if transcript expression is the same. This is adjusted by dividing the FPM by the length of a feature (which can be a gene, transcript, or exon), resulting in the metric fragments per kilobase of feature per million mapped reads (FPKM). [90]

  8. Closure problem - Wikipedia

    en.wikipedia.org/wiki/Closure_problem

    The capacity of the cut equals the weight of all positive-weight vertices minus the weight of the vertices in C, which is minimized when the weight of C is maximized. By the max-flow min-cut theorem, a minimum cut, and the optimal closure derived from it, can be found by solving a maximum flow problem. [1]

  9. Maximum coverage problem - Wikipedia

    en.wikipedia.org/wiki/Maximum_coverage_problem

    In the weighted version every element has a weight (). The task is to find a maximum coverage which has maximum weight. The basic version is a special case when all weights are . maximize (). (maximizing the weighted sum of covered elements).