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CLC bio CLC DNA Workbench Software; CLC bio CLC Free Workbench Software; CLC bio CLC Sequence Viewer; CLC bio Protein Workbench Software; DNASTAR Lasergene; Geneious; LabVantage Solutions Inc. LabVantage Sapphire; LabVantage Solutions Inc. LV LIMS; Mega2; SnapGene; The GeneRecommender
Suite of tools for assembly, alignment, and analysis of short read next generation sequencing data Unix/Linux, macOS: GPL: BGI: Staden Package: Sequence assembly, editing, and analysis, mainly consisting of gap4, gap5, and spin. Written in C, C++, Fortran and Tcl. Linux, macOS, Windows: BSD: Wellcome Trust Sanger Institute, Medical Research Council
UFRaw (originally named after its founder Udi Fuchs's Raw, the backronym Unidentified Flying Raw replaced it as the full name) is an application which can read and manipulate photographs in raw image formats, as created by many digital cameras. [2]
The fourth is a great example of how interactive graphical tools enable a worker involved in sequence analysis to conveniently execute a variety if different computational tools to explore an alignment's phylogenetic implications; or, to predict the structure and functional properties of a specific sequence, e.g., comparative modelling.
The GNU Image Manipulation Program, commonly known by its acronym GIMP (/ ɡ ɪ m p / ⓘ GHIMP), is a free and open-source raster graphics editor [3] used for image manipulation (retouching) and image editing, free-form drawing, transcoding between different image file formats, and more specialized tasks. It is extensible by means of plugins ...
For DNA, RNA and protein molecules up to 32MB, aligns all sequences of size K or greater. Similar alignments are grouped together for analysis. Automatic repetitive sequence filter. Both Local E. Wachtel 2017 Bioconductor Biostrings::pairwiseAlignment Dynamic programming: Both: Both + Ends-free: P. Aboyoun: 2008 BioPerl dpAlign Dynamic ...
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The Alignment Editor in MEGA includes an integrated tool for both ClustalW and MUSCLE programs. All actions take place in the Analysis Explorer, which can be found in the main menu of MEGA. When a new alignment is being created, the user is presented with three options: create a new alignment, open a saved alignment session, or retrieve ...