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Name Method description Type Link Initial release RaptorX-SS8 : predict both 3-state and 8-state secondary structure using conditional neural fields from PSI-BLAST profiles ...
A unified interface for: Tertiary structure prediction/3D modelling, 3D model quality assessment, Intrinsic disorder prediction, Domain prediction, Prediction of protein-ligand binding residues Automated webserver and some downloadable programs RaptorX: remote homology detection, protein 3D modeling, binding site prediction
What a Web server is to the Internet, a model server is to AI. Where a Web server receives an HTTP request and returns data about a Web site, a model server receives data, and returns a decision or prediction about that data: e.g. sent an image, a model server might return a label for that image, identifying faces or animals in photographs.
This list of protein subcellular localisation prediction tools includes software, databases, and web services that are used for protein subcellular localization prediction. Some tools are included that are commonly used to infer location through predicted structural properties, such as signal peptide or transmembrane helices , and these tools ...
Self-contained DNN Model Pre-processing and Post-processing Run-time configuration for tuning & calibration DNN model interconnect Common platform TensorFlow, Keras, Caffe, Torch: Algorithm training No No / Separate files in most formats No No No Yes ONNX: Algorithm training Yes No / Separate files in most formats No No No Yes
JASP – A free software alternative to IBM SPSS Statistics with additional option for Bayesian methods; JMulTi – For econometric analysis, specialised in univariate and multivariate time series analysis; Just another Gibbs sampler (JAGS) – a program for analyzing Bayesian hierarchical models using Markov chain Monte Carlo developed by ...
Keras is an open-source library that provides a Python interface for artificial neural networks. Keras was first independent software, then integrated into the TensorFlow library, and later supporting more. "Keras 3 is a full rewrite of Keras [and can be used] as a low-level cross-framework language to develop custom components such as layers ...
The vast majority of modern systems biology modeling software support SBML, which is the de facto standard for exchanging models of biological cellular processes. Some tools also support CellML , a standard used for representing physiological processes.