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DESeq2 is a software package in the field of bioinformatics and computational biology for the statistical programming language R. It is primarily employed for the analysis of high-throughput RNA sequencing (RNA-seq) data to identify differentially expressed genes between different experimental conditions.
Using DESeq2 as a framework, DEvis provides a wide variety of tools for data manipulation, visualization, and project management. DEXSeq is Bioconductor package that finds differential differential exon usage based on RNA-Seq exon counts between samples. DEXSeq employs negative binomial distribution, provides options to visualization and ...
Within computational biology, an MA plot is an application of a Bland–Altman plot for visual representation of genomic data. The plot visualizes the differences between measurements taken in two samples, by transforming the data onto M (log ratio) and A (mean average) scales, then plotting these values.
Beyond preprocessing raw MS data to remove noise, normalize intensities, and detect peaks and converting proprietary file formats (e.g., RAW) to open-source formats (mzML, mzXML) for compatibility with downstream analysis tools, other analytical steps include peptide identification, peptide quantification, protein inference and quantification ...
RGB value in the form R, G, B (e.g. 255,0,0) determining the display color of the annotation contained in the BED file No 10: blockCount: Number of blocks (e.g. exons) on the line of the BED file No 11: blockSizes: List of values separated by commas corresponding to the size of the blocks (the number of values must correspond to that of the ...
These eggnog baked oats offer a festive twist on a breakfast classic and bring a little holiday cheer to your breakfast table. This easy breakfast combines the warm, spiced flavors of traditional ...
Bill Clinton is one proud grandpa!. On Monday, Nov. 25, the former President of the United States, 78, appeared on an episode of Live with Kelly and Mark and spoke about how he and the former ...
Matthew McConaughey may claim to be a “tuna fish salad master maker,” but Camila Alves McConaughey is setting the record straight. The model dished to PEOPLE about what she thinks of the True ...