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BrowserGenome: [144] web-based RNA-seq data analysis and visualization. Degust An interactive web tool for visualising Differential Gene Expression data. DensityMap is a perl tool for the visualization of features density along chromosomes. EagleView EagleView is an information-rich genome assembler viewer with data integration capability ...
You are free: to share – to copy, distribute and transmit the work; to remix – to adapt the work; Under the following conditions: attribution – You must give appropriate credit, provide a link to the license, and indicate if changes were made.
DESeq2 is a software package in the field of bioinformatics and computational biology for the statistical programming language R.It is primarily employed for the analysis of high-throughput RNA sequencing (RNA-seq) data to identify differentially expressed genes between different experimental conditions.
Among the products of the program is the Azimuth reference datasets for single-cell RNA seq data [2] [3] and the ASCT+B Reporter, a visualization tool for anatomical structures, cell types and biomarkers. [4] [5] Millitomes are used to create uniformly sized tissue blocks that match the shape and size of organs from HuBMAP's 3D Reference Object ...
Additionally, gene expression data collection, search and visualization is provided. Gene search - Search genes by name, symbol or synonym directly from the landing page; Gene nomenclature guidelines - Echinobase is the official body responsible for echinoderm gene naming; Genome browser with tracks for RNA-seq and ATAC-seq data - Echinobase ...
You are free: to share – to copy, distribute and transmit the work; to remix – to adapt the work; Under the following conditions: attribution – You must give appropriate credit, provide a link to the license, and indicate if changes were made.
Inchworm assembles the RNA-Seq data into transcript sequences, often generating full-length transcripts for a dominant isoform, but then reports just the unique portions of alternatively spliced transcripts. Chrysalis clusters the Inchworm contigs and constructs complete de Bruijn graphs for each cluster. Each cluster represents the full ...
RNA-Seq viewers - Graphs of temporal expression profiles and spatial (anatomy) expression heatmaps for both laevis and tropicalis; Gene Expression - Xenbase supports search and visualization of Gene Expression Omnibus (GEO) data sets, mapped to the latest Xenopus genomes. BLAST - Users can BLAST against Xenopus genomes, RNA, and protein sequences