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HPC-BLAST: NCBI compliant multinode and multicore BLAST wrapper. Distributed with the latest version of BLAST, this wrapper facilitates parallelization of the algorithm on modern hybrid architectures with many nodes and many cores within each node. [2] Protein: Burdyshaw CE, Sawyer S, Horton MD, Brook RG, Rekapalli B: 2017 CS-BLAST
NCBI has a "Magic-BLAST" tool built around BLAST for this purpose. [31] Comparison When working with genes, BLAST can locate common genes in two related species, and can be used to map annotations from one organism to another. Classifying taxonomy BLAST can use genetic sequences to compare multiple taxa against known taxonomical data.
The NCBI assigns a unique identifier (taxonomy ID number) to each species of organism. [5] The NCBI has software tools that are available through web browsers or by FTP. For example, BLAST is a sequence similarity searching program. BLAST can do sequence comparisons against the GenBank DNA database in less than 15 seconds.
The web-based application of BLAT can be accessed from the UCSC Genome Bioinformatics Site. [8] Building the index is a relatively slow procedure. Therefore, each genome assembly used by the web-based BLAT is associated with a BLAT server, in order to have a pre-computed index available for alignments.
Gene Codes Corporation is a privately owned international firm based in Ann Arbor, Michigan, which specializes in bioinformatics software for genetic sequence analysis.Its flagship software product, Sequencher, is a sequencing software used throughout the world.
SwissTargetPrediction is a web server for target prediction of bioactive small molecules. This website allows you to predict the targets of a small molecule. Using a combination of 2D and 3D similarity measures, it compares the query molecule to a library of 280 000 compounds active on more than 2000 targets of 5 different organisms. (bio.tools ...
Online Database searching - Search public databases at the NCBI such as Genbank, PubMed, and UniProt. Perform online BLAST searches. Protein analysis. Contig assembly and chromatogram editing; Aligning cDNA against genomic templates; Creating dot plots of DNA to DNA, Protein to Protein and DNA to protein.
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