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Bayesian Analysis of Trees With Internal Node Generation: Bayesian inference, demographic history, population splits: I. J. Wilson, Weale, D.Balding BayesPhylogenies [8] Bayesian inference of trees using Markov chain Monte Carlo methods: Bayesian inference, multiple models, mixture model (auto-partitioning) M. Pagel, A. Meade BayesTraits [9]
PLINK [1] is a free, commonly used, open-source whole-genome association analysis toolset designed by Shaun Purcell. The software is designed flexibly to perform a wide range of basic, large-scale genetic analyses. PLINK currently supports following functionalities: data management;
Mondrian – data analysis tool using interactive statistical graphics with a link to R; Neurophysiological Biomarker Toolbox – Matlab toolbox for data-mining of neurophysiological biomarkers; OpenBUGS; OpenEpi – A web-based, open-source, operating-independent series of programs for use in epidemiology and statistics based on JavaScript and ...
A computer-assisted design (CAD) tool for synthetic biology, used to design genetic constructs based on grammar rules. Linux, macOS, Windows: Apache License 2.0 GenoCAD Team (Virginia Bioinformatics Institute) Genomespace: Centralized web application that provides data format transformations and facilitates connections with other bioinformatics ...
Generic Mapping Tools [16] Map generation and analysis Lamont–Doherty and University of Hawaii: GPL: Cross-platform: C: Implemented in OpendTect GPlates [17] Interactive visualization of plate tectonics University of Sydney, Caltech, NGU: GPL: Cross-platform: C++, Python: Implements GPML: OpenStereo [18] [19] Geoscience plotting tool
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Tajima's D is a population genetic test statistic created by and named after the Japanese researcher Fumio Tajima. [1] Tajima's D is computed as the difference between two measures of genetic diversity: the mean number of pairwise differences and the number of segregating sites, each scaled so that they are expected to be the same in a neutrally evolving population of constant size.
QtiPlot is a data analysis and scientific visualisation program, similar to Origin. ROOT is a free object-oriented multi-purpose data-analysis package, developed at CERN . Salome is a free software tool that provides a generic platform for pre- and post-processing for numerical simulation.