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spaCy (/ s p eɪ ˈ s iː / spay-SEE) is an open-source software library for advanced natural language processing, written in the programming languages Python and Cython. [3] [4] The library is published under the MIT license and its main developers are Matthew Honnibal and Ines Montani, the founders of the software company Explosion.
Spark NLP for Healthcare is a commercial extension of Spark NLP for clinical and biomedical text mining. [10] It provides healthcare-specific annotators, pipelines, models, and embeddings for clinical entity recognition, clinical entity linking, entity normalization, assertion status detection, de-identification, relation extraction, and spell checking and correction.
Pandas (styled as pandas) is a software library written for the Python programming language for data manipulation and analysis.In particular, it offers data structures and operations for manipulating numerical tables and time series.
The Transformers library is a Python package that contains open-source implementations of transformer models for text, image, and audio tasks. It is compatible with the PyTorch, TensorFlow and JAX deep learning libraries and includes implementations of notable models like BERT and GPT-2. [16]
Astropy, a library of Python tools for astronomy and astrophysics. Biopython, a Python molecular biology suite; Gensim, a library for natural language processing, including unsupervised topic modeling and information retrieval; graph-tool, a Python module for manipulation and statistical analysis of graphs.
Dask is an open-source Python library for parallel computing.Dask [1] scales Python code from multi-core local machines to large distributed clusters in the cloud. Dask provides a familiar user interface by mirroring the APIs of other libraries in the PyData ecosystem including: Pandas, scikit-learn and NumPy.
CellProfiler interfaces with the high-performance scientific libraries NumPy and SciPy for many mathematical operations, the Open Microscopy Environment [11] Consortium’s Bio-Formats library for reading more than 100 image file formats, ImageJ for use of plugins and macros, and ilastik for pixel-based classification. [12]
SciPy (pronounced / ˈ s aɪ p aɪ / "sigh pie" [2]) is a free and open-source Python library used for scientific computing and technical computing. [3]SciPy contains modules for optimization, linear algebra, integration, interpolation, special functions, FFT, signal and image processing, ODE solvers and other tasks common in science and engineering.