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Free open-source, GPL C++, Qt, extensible via Python modules BALL: Molecular dynamics MM NMR: LGPL open-source: Standalone program [7] Cn3D: Free open-source: Standalone program [8] In the NCBI C++ toolkit Coot: XRD: Free open-source: Gabedit: XRD MM: Free open-source: C [9] Jmol: Free open-source: Java (applet or standalone program) Transpiled ...
PyMOL is a source-available [2] molecular visualization system created by Warren Lyford DeLano. It was commercialized initially by DeLano Scientific LLC, which was a private software company dedicated to creating useful tools that become universally accessible to scientific and educational communities.
Free open source: ms-2.de: OpenMM: No No Yes Yes Yes Yes No Yes Yes High Performance MD, highly flexible, Python scriptable Free open source MIT: OpenMM: Orac: No No Yes Yes No Yes No Yes No Molecular dynamics simulation program to explore free energy surfaces in biomolecular systems at the atomic level Free open source: Orac download page ...
Molekel is a free software multiplatform molecular visualization program. [1] It was originally developed at the University of Geneva by Peter F. Flükiger in the 1990s for Silicon Graphics Computers. In 1998, Stefan Portmann took over responsibility and released Version 3.0. Version 4.0 was a nearly platform independent version.
Perform atomistic simulations of solid state, liquid, molecular and biological systems, written in Fortran 2003. Linux, macOS, Windows: GPL and LGPL: Free open source GNU GPLv2 or later EMBOSS: Suite of packages for sequencing, searching, etc. written in C: Linux, macOS, Unix, Windows [4] GPL and LGPL: Collaborative project Galaxy
Jmol is computer software for molecular modelling chemical structures in 3-dimensions. [2] Jmol returns a 3D representation of a molecule that may be used as a teaching tool, [ 3 ] or for research e.g., in chemistry and biochemistry .
Free and open-source software portal Molsketch is a molecule editor for 2D computer graphics published as free software . [ 1 ] It is written in C++ with the Qt toolkit for Microsoft Windows and Linux .
free and open-source: tomviz: EM Optical: free and open-source: Windows, Linux, Mac Integrates Python / SciPy OME ... List of molecular graphics systems; References