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Download QR code; Print/export ... Avogadro is a molecule editor and visualizer designed for cross-platform use in computational chemistry, molecular modeling, ...
Saric M. "Free Molecular Modelling Programs =". A rather detailed, objective, and technical assessment of about 20 tools. "PDB list of molecular graphics tools". "Index of Molecular Visualization Resources". "Molecular Visualization Resources by Eric Martz"
Avogadro: C++ based molecule editor and visualizer for in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. Linux, macOS, Unix, Windows: 3-Clause BSD License: Open Chemistry Project: BEDtools "Genome arithmetic"—manipulation of coordinate sets and the extraction of sequences from a BED file ...
High performance GPU-accelerated ab initio molecular dynamics and TD/DFT software package for very large molecular or even nanoscale systems. Runs on NVIDIA GPUs and 64-bit Linux, has heavily optimized CUDA code. Proprietary, trial licenses available PetaChem LLC: TINKER: I Yes Yes Yes Yes I I Yes Yes Software tools for molecular design-Tinker ...
A molecular editor with visualization capabilities, designed to work with Q-Chem. 10 October 2024 VMD: University of Illinois: Free for non-commercial use: Cross-platform: 3D Molecular visualization tool that includes structure editing through the Molefacture plugin. 30 November 2016 HyperChem: Hypercube, Inc. Proprietary: Windows, Linux
They may also include density functional theory (DFT), molecular mechanics or semi-empirical quantum chemistry methods. The programs include both open source and commercial software. Most of them are large, often containing several separate programs, and have been developed over many years.
YAeHMOP has also been merged with the Avogadro open-source molecular editor and visualizer to enable calculations directly from the Avogadro graphical user interface for materials that are periodic in one, two, or three dimensions. [11]
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