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Most Ensembl Genomes data is stored in MySQL relational databases and can be accessed by the Ensembl REST interface, the Perl API, Biomart or online. [5] Ensembl Genomes is an open project, and most of the code, tools, and data are available to the public. [6] Ensembl and Ensembl Genomes software uses an Apache 2.0 license [7] license.
In the Ensembl project, sequence data are fed into the gene annotation system (a collection of software "pipelines" written in Perl) which creates a set of predicted gene locations and saves them in a MySQL database for subsequent analysis and display. Ensembl makes these data freely accessible to the world research community.
The summary table result in ranking the different level of similarity between the identified genes and the probe gene. Annotation unification: Different data sources often offer annotations with heterogeneous naming system. Annotation unification of GeneDecks is based on the similarity in GeneCards gene-content space detection algorithms.
2647 14533 Ensembl ENSG00000135441 ENSMUSG00000090247 UniProt P78537 O55102 RefSeq (mRNA) NM_001487 NM_015740 RefSeq (protein) NP_001478 NP_056555 Location (UCSC) Chr 12: 55.72 – 55.72 Mb Chr 10: 128.75 – 128.76 Mb PubMed search Wikidata View/Edit Human View/Edit Mouse Biogenesis of lysosome-related organelles complex 1 subunit 1 is a protein that in humans is encoded by the BLOC1S1 gene ...
The CCDS reports (Figure 1) are presented in a table format, providing links to specific resources, such as a history report, Entrez Gene [10] or re-query the CCDS data set. The sequence identifiers table presents transcript information in VEGA, Ensembl and Blink. The chromosome location table includes the genomic coordinates for each ...
Patient data is made accessible to other members of the consortium and viewable through Ensembl if a consent form is signed by the patient. [8] With informed consent, the anonymized deletion/duplication and phenotypes become available for view to DECIPHER consortium members and public users, with different levels of access (e.g. only logged ...
868 208650 Ensembl ENSG00000114423 ENSMUSG00000022637 UniProt Q13191 Q3TTA7 RefSeq (mRNA) NM_170662 NM_001321786 NM_001321788 NM_001321789 NM_001321790 NM_001321791 NM_001321793 NM_001321794 NM_001321795 NM_001321796 NM_001321797 NM_001321798 NM_001321799 NM_001321806 NM_001321807 NM_001321808 NM_001321811 NM_001321813 NM_001321816 NM_001321820 NM_001321822 NM_004351 NM_001033238 RefSeq ...
21425 Ensembl ENSG00000112561 ENSMUSG00000023990 UniProt P19484 Q9R210 RefSeq (mRNA) NM_001167827 NM_001271943 NM_001271944 NM_001271945 NM_007162 NM_001161722 NM_001161723 NM_011549 RefSeq (protein) NP_001161299 NP_001258872 NP_001258873 NP_001258874 NP_009093 NP_001155194 NP_001155195 NP_035679 Location (UCSC) Chr 6: 41.68 – 41.74 Mb Chr 17: 48.05 – 48.1 Mb PubMed search Wikidata View ...