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  2. ggplot2 - Wikipedia

    en.wikipedia.org/wiki/Ggplot2

    ggplot2 is an open-source data visualization package for the statistical programming language R.Created by Hadley Wickham in 2005, ggplot2 is an implementation of Leland Wilkinson's Grammar of Graphics—a general scheme for data visualization which breaks up graphs into semantic components such as scales and layers. ggplot2 can serve as a replacement for the base graphics in R and contains a ...

  3. Project Jupyter - Wikipedia

    en.wikipedia.org/wiki/Project_Jupyter

    A Jupyter Notebook document is a JSON file, following a versioned schema, usually ending with the ".ipynb" extension. The main parts of the Jupyter Notebooks are: Metadata, Notebook format and list of cells. Metadata is a data Dictionary of definitions to set up and display the notebook. Notebook Format is a version number of the software.

  4. IPython - Wikipedia

    en.wikipedia.org/wiki/IPython

    IPython continued to exist as a Python shell and kernel for Jupyter, but the notebook interface and other language-agnostic parts of IPython were moved under the Jupyter name. [ 11 ] [ 12 ] Jupyter is language agnostic and its name is a reference to core programming languages supported by Jupyter, which are Julia , Python , and R .

  5. List of RNA-Seq bioinformatics tools - Wikipedia

    en.wikipedia.org/wiki/List_of_RNA-Seq...

    fastqp Simple FASTQ quality assessment using Python. Kraken: [9] A set of tools for quality control and analysis of high-throughput sequence data. HTSeq [10] The Python script htseq-qa takes a file with sequencing reads (either raw or aligned reads) and produces a PDF file with useful plots to assess the technical quality of a run.

  6. Plotly - Wikipedia

    en.wikipedia.org/wiki/Plotly

    Enterprise users can write applications in multiple development environments, including Jupyter Notebook. [41] Dash Enterprise ships with several “development engines” for drag-and-drop application editing, application design, and automated reporting, as well as dozens of artificial intelligence and machine learning application templates.

  7. Anaconda (Python distribution) - Wikipedia

    en.wikipedia.org/wiki/Anaconda_(Python_distribution)

    Anaconda is an open source [9] [10] data science and artificial intelligence distribution platform for Python and R programming languages.Developed by Anaconda, Inc., [11] an American company [1] founded in 2012, [11] the platform is used to develop and manage data science and AI projects. [9]

  8. Indentation style - Wikipedia

    en.wikipedia.org/wiki/Indentation_style

    In computer programming, indentation style is a convention, a.k.a. style, governing the indentation of blocks of source code.An indentation style generally involves consistent width of whitespace (indentation size) before each line of a block, so that the lines of code appear to be related, and dictates whether to use space or tab characters for the indentation whitespace.

  9. List of free and open-source software packages - Wikipedia

    en.wikipedia.org/wiki/List_of_free_and_open...

    This is a list of free and open-source software packages (), computer software licensed under free software licenses and open-source licenses.Software that fits the Free Software Definition may be more appropriately called free software; the GNU project in particular objects to their works being referred to as open-source. [1]