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Suffix arrays are closely related to suffix trees: . Suffix arrays can be constructed by performing a depth-first traversal of a suffix tree. The suffix array corresponds to the leaf-labels given in the order in which these are visited during the traversal, if edges are visited in the lexicographical order of their first character.
In the array, each suffix is represented by an integer pair (,) which denotes the suffix starting from position in . In the case where different strings in have identical suffixes, in the generalized suffix array, those suffixes will occupy consecutive positions. However, for convenience, the exception can be made where repeats will not be listed.
Array, a sequence of elements of the same type stored contiguously in memory; Record (also called a structure or struct), a collection of fields Product type (also called a tuple), a record in which the fields are not named; String, a sequence of characters representing text; Union, a datum which may be one of a set of types
In computer science, a compressed suffix array [1] [2] [3] is a compressed data structure for pattern matching. Compressed suffix arrays are a general class of data structure that improve on the suffix array. [1] [2] These data structures enable quick search for an arbitrary string with a comparatively small index.
In computer science, Ukkonen's algorithm is a linear-time, online algorithm for constructing suffix trees, proposed by Esko Ukkonen in 1995. [1] The algorithm begins with an implicit suffix tree containing the first character of the string.
Augmenting the suffix array with the LCP array allows one to efficiently simulate top-down and bottom-up traversals of the suffix tree, [1] [2] speeds up pattern matching on the suffix array [3] and is a prerequisite for compressed suffix trees.
An alternative to building a generalized suffix tree is to concatenate the strings, and build a regular suffix tree or suffix array for the resulting string. When hits are evaluated after a search, global positions are mapped into documents and local positions with some algorithm and/or data structure, such as a binary search in the starting ...
The numbers in the leaves give the start position of the corresponding suffix. Suffix links, drawn dashed, are used during construction. In computer science, a suffix tree (also called PAT tree or, in an earlier form, position tree) is a compressed trie containing all the suffixes of the given text as their keys and positions in the text as ...