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DESeq2 is a software package in the field of bioinformatics and computational biology for the statistical programming language R. It is primarily employed for the analysis of high-throughput RNA sequencing (RNA-seq) data to identify differentially expressed genes between different experimental conditions.
NEUMA is a tool to estimate RNA abundances using length normalization, based on uniquely aligned reads and mRNA isoform models. NEUMA uses known transcriptome data available in databases like RefSeq. NOISeq NOISeq is a non-parametric approach for the identification of differentially expressed genes from count data or previously normalized count ...
Finally, a normalized count matrix with gene expression values is obtained. ADT data analysis [2] [7] [10] [11] (based on the developer's guidelines): CITE-seq-Count is a Python package from CITE-Seq developers that can be used to obtain raw counts. Seurat package from Satija lab further allows combining of the protein and RNA counts and ...
Gene ontology terms describe gene functions and the relationships between those functions into three classes: Molecular function; Cellular component; Biological process; Gene Ontology (GO) term enrichment is a technique used to identify which GO terms are over-represented or under-represented in a given set of genes. In single-cell analysis ...
Line breaks normalized to #xA on input, before parsing; Attribute values are normalized, as if by a validating processor; Character and parsed entity references are replaced; CDATA sections are replaced with their character content; The XML declaration and document type declaration are removed; Empty elements are converted to start-end tag pairs
The opening weeks of the NBA season have been besieged by absent stars. This past week’s games turned out to be particularly destructive. First, on Thursday, news broke that Philadelphia 76ers ...
In another usage in statistics, normalization refers to the creation of shifted and scaled versions of statistics, where the intention is that these normalized values allow the comparison of corresponding normalized values for different datasets in a way that eliminates the effects of certain gross influences, as in an anomaly time series. Some ...
A Canadian man has been arrested by Indian authorities at the New Delhi’s airport after a crocodile skull was found in his luggage.