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The FMRIB Software Library, abbreviated FSL, is a software library containing image analysis and statistical tools for functional, structural and diffusion MRI brain imaging data. FSL is available as both precompiled binaries and source code for Apple and PC computers. It is freely available for non-commercial use.
CONN preprocessing pipeline includes steps designed to estimate and correct effects derived from subject motion within the scanner (realignment), correct spatial distortions due to inhomogeneities in the magnetic field (susceptibility distortion correction), correct for temporal misalignment across slices (slice timing correction), identify potential outlier images within each scanning session ...
Neuroimaging software is used to study the structure and function of the brain. To see an NIH Blueprint for Neuroscience Research funded clearinghouse of many of these software applications, as well as hardware, etc. go to the NITRC web site. 3D Slicer Extensible, free open source multi-purpose software for visualization and analysis.
OsiriX is simultaneously a DICOM PACS workstation for imaging and an image processing software package for research (radiology and nuclear imaging), functional imaging, 3D imaging, confocal microscopy and molecular imaging. OsiriX supports a complete plug-in architecture that allows one to expand the capabilities of OsiriX for personal needs.
Analyze is a software package developed by the Biomedical Imaging Resource (BIR) at Mayo Clinic for multi-dimensional display, processing, and measurement of multi-modality biomedical images. It is a commercial program and is used for medical tomographic scans from magnetic resonance imaging , computed tomography and positron emission tomography .
Siemens Digital Industries Software (formerly UGS and then Siemens PLM Software) is an American computer software company specializing in 3D & 2D Product Lifecycle Management (PLM) software. The company is a business unit of Siemens , operates under the legal name of Siemens Industry Software Inc , and is headquartered in Plano, Texas .
FreeSurfer interoperates easily with the FMRIB Software Library (FSL), a comprehensive library for image analysis written by the Functional MRI of the Brain (FMRIB) group at Oxford, UK. The functional activation results obtained using either the FreeSurfer Functional Analysis Stream (FS-FAST) or the FSL tools can be overlaid onto inflated ...
Diffusion imaging is an MRI method that produces in vivo magnetic resonance images of biological tissues sensitized with the local characteristics of molecular diffusion, generally water (but other moieties can also be investigated using MR spectroscopic approaches). [15] MRI can be made sensitive to the motion of molecules.