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An autophagosome is a spherical structure with double layer membranes. [2] It is the key structure in macroautophagy , the intracellular degradation system for cytoplasmic contents (e.g., abnormal intracellular proteins , excess or damaged organelles , invading microorganisms).
First the phagophore engulfs the material that needs to be degraded, which forms a double membrane known as an autophagosome, around the organelle marked for destruction. [34] [42] The autophagosome then travels through the cytoplasm of the cell to a lysosome in mammals, or vacuoles in yeast and plants, [43] and the two organelles fuse. [34]
Omegasomes act as progenitors of autophagosome formation during the autophagy pathway. [14] There are various autophagosome mediators involved in autophagy, however it is the omegasome regulation of the pathway that provides a smooth transition of autophagosome formation, and enrichment of nutrients in the cells.
Microtubule-associated proteins 1A/1B light chain 3B (hereafter referred to as LC3) is a protein that in humans is encoded by the MAP1LC3B gene. [5] LC3 is a central protein in the autophagy pathway where it functions in autophagy substrate selection and autophagosome biogenesis. LC3 is the most widely used marker of autophagosomes. [6]
Many Mycobacteria, including Mycobacterium tuberculosis [4] [5] and Mycobacterium avium paratuberculosis, [6] can manipulate the host macrophage to prevent lysosomes from fusing with phagosomes and creating mature phagolysosomes. Such incomplete maturation of the phagosome maintains an environment favorable to the pathogens inside it.
This CMA-targeting motif is recognized by a cytosolic chaperone, heat shock cognate protein of 70 kDa (hsc70) which targets the substrate to the lysosome surface. [5] This substrate protein-chaperone complex binds to lysosome-associated membrane protein type 2A (LAMP-2A), which acts as the receptor for this pathway. [ 6 ]
Autophagy protein 5 (ATG5) is a protein that, in humans, is encoded by the ATG5 gene located on chromosome 6. It is an E3 ubi autophagic cell death . ATG5 is a key protein involved in the extension of the phagophoric membrane in autophagic vesicles.
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