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  2. Mutation - Wikipedia

    en.wikipedia.org/wiki/Mutation

    Nucleotide substitution (e.g., 76A>T) – The number is the position of the nucleotide from the 5' end; the first letter represents the wild-type nucleotide, and the second letter represents the nucleotide that replaced the wild type. In the given example, the adenine at the 76th position was replaced by a thymine.

  3. Missense mutation - Wikipedia

    en.wikipedia.org/wiki/Missense_mutation

    Missense mutation refers to a change in one amino acid in a protein, arising from a point mutation in a single nucleotide. Missense mutation is a type of nonsynonymous substitution in a DNA sequence.

  4. Nonsynonymous substitution - Wikipedia

    en.wikipedia.org/wiki/Nonsynonymous_substitution

    A nonsynonymous substitution is a nucleotide mutation that alters the amino acid sequence of a protein.Nonsynonymous substitutions differ from synonymous substitutions, which do not alter amino acid sequences and are (sometimes) silent mutations.

  5. Single-nucleotide polymorphism - Wikipedia

    en.wikipedia.org/wiki/Single-nucleotide_polymorphism

    In genetics and bioinformatics, a single-nucleotide polymorphism (SNP / s n ɪ p /; plural SNPs / s n ɪ p s /) is a germline substitution of a single nucleotide at a specific position in the genome. Although certain definitions require the substitution to be present in a sufficiently large fraction of the population (e.g. 1% or more), [ 1 ...

  6. Nonsense mutation - Wikipedia

    en.wikipedia.org/wiki/Nonsense_mutation

    Missense mutations differ from nonsense mutations since they are point mutations that exhibit a single nucleotide change to cause substitution of a different amino acid. A nonsense mutation also differs from a nonstop mutation, which is a point mutation that removes a stop codon.

  7. Mutational signatures - Wikipedia

    en.wikipedia.org/wiki/Mutational_signatures

    A[C>A]A, A[C>A]T, etc.). The mutation catalog of a tumor is created by categorizing each single nucleotide variant (SNV) (synonyms: base-pair substitution or substitution point mutation) in one of the 96 mutation types and counting the total number of substitutions for each of these 96 mutation types (see figure).

  8. Synonymous substitution - Wikipedia

    en.wikipedia.org/wiki/Synonymous_substitution

    Point substitution mutations of a codon, classified by their impact on protein sequence. A synonymous substitution (often called a silent substitution though they are not always silent) is the evolutionary substitution of one base for another in an exon of a gene coding for a protein, such that the produced amino acid sequence is not modified.

  9. Ka/Ks ratio - Wikipedia

    en.wikipedia.org/wiki/Ka/Ks_ratio

    A point mutation causing a nonsynonymous substitution; Type of structure Before Change After Result Codon in a DNA sequence: GAG: Missense mutation; Nonsynonymous substitution: GTG: ↓ codes for: ↓ codes for ↓ codes for: Amino acid in a Protein: Glutamic acid structural change: Valine Altered protein may or may not cause harm