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Serratus is a large scale viroinformatics platform for uncovering the total genetic diversity of Earth's virome.Originating with the goal of uncovering novel coronaviruses [1] that may have been incidentally sequenced by other researchers, the project expanded to encompass all RNA viruses, those which encode a viral RNA-dependent RNA polymerase (RdRp).
An RNA secondary structure prediction software based on feature-rich trained scoring models. No: sourcecode webserver [4] CONTRAfold: Secondary structure prediction method based on conditional log-linear models (CLLMs), a flexible class of probabilistic models which generalize upon SCFGs by using discriminative training and feature-rich scoring. No
List of protein structure prediction software; Category:Molecular dynamics software; Structural alignment software; Other. Compression of genomic sequencing data; Bioinformatics workflow management system; List of genetic engineering software; List of systems biology visualization software; List of systems biology modelling software; 2D gel ...
Taverna is an open source and domain-independent Workflow Management System – a suite of tools used to design and execute scientific workflows and aid in silico experimentation. TCW is a Transcriptome Computational Workbench. TRAPLINE a standardized and automated pipeline for RNA sequencing data analysis, evaluation and annotation.
Support-vector machine (SVM) based system to find genes: Eukaryotes [34] mGene.ngs SVM based system to find genes using heterogeneous information: RNA-seq, tiling arrays: Eukaryotes [35] MORGAN: Decision tree system to find genes in vertebrate DNA: Eukaryotes [36] BioNIX
Galaxy is a scientific workflow system.These systems provide a means to build multi-step computational analyses akin to a recipe. They typically provide a graphical user interface [6] for specifying what data to operate on, what steps to take, and what order to do them in.
The CRISPR/Cas (clustered regularly interspaced short palindromic repeats/CRISPR associated nucleases) system was originally discovered to be an acquired immune response mechanism used by archaea and bacteria. It has since been adopted for use as a tool in the genetic engineering of higher organisms.
Software. Model-Builder: Interactive (GUI-based) software to build, simulate, and analyze ODE models. GLEaMviz Simulator: Enables simulation of emerging infectious diseases spreading across the world. STEM: Open source framework for Epidemiological Modeling available through the Eclipse Foundation.