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Arlequin is a free population genetics software distributed as an integrated GUI data analysis software. [1] It performs several types of tests and calculations, including Fixation index (F st, also known as the "F-statistics" [2]), computing genetic distance, Hardy–Weinberg equilibrium, linkage disequilibrium, analysis of molecular variance, mismatch distribution, and pairwise difference tests.
Simple Java tree viewer able to read newick and nexus tree files. Can be used to color branches and produce vector artwork. All [24] JEvTrace A multivalent browser for sequence alignment, phylogeny, and structure. Performs an interactive Evolutionary Trace [25] and other phylogeny-inspired analysis. All [26] MEGA
Linux, macOS, Windows: Apache License 2.0 Apache Software Foundation, myGrid: Ascalaph Designer: Computer program for general purpose molecular modelling for molecular design and simulations. Windows: GPLv2: Agile Molecule AutoDock: Suite of automated docking tools Linux, Mac OS X, SGI IRIX, and Windows: GPL: Scripps Research: Avogadro
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The BLUPF90 family of programs is a statistical software package used in quantitative genetics for animal and plant breeding. [ 1 ] [ 2 ] It can fit mixed models using restricted maximum likelihood as well as Gibbs sampling to estimate variance components, and predict breeding values via best linear unbiased prediction (BLUP).
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