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MM XRD: Free open-source: Java 3D applet or standalone program: Ovito: MM XRD EM MD: Free open-source: Python [13] [14] PyMOL: MM XRD SMI EM: Open-source [15] Python [16] [self-published source?] According to the author, almost 1/4 of all published images of 3D protein structures in the scientific literature were made via PyMOL. [citation ...
Coot displays electron density maps and atomic models and allows model manipulations such as idealization, real space refinement, manual rotation/translation, rigid-body fitting, ligand search, solvation, mutations, rotamers, and Ramachandran idealization.
LPGL 3.0 Cross-platform: Python: Documentation and tutorials fully available in ReadTheDocs: geoapps repository [24] The geoapps repository are open-source geoscientific applications in Python, including geophysical data processing, modelling, and inversion codes Mira Geoscience Ltd. MIT: Cross-platform: Python
Biological data visualization is a branch of bioinformatics concerned with the application of computer graphics, scientific visualization, and information visualization to different areas of the life sciences.
To determine the crystallographic orientation of the grains in the considered sample, the following software packages are in use: Fable [8] and GrainSpotter. [9] Reconstructing the 3D shape of the grains is nontrivial and three approaches are available to do so, respectively based on simple back-projection, forward projection, algebraic ...
Users can download the raw PAE data for all residue pairs in a custom JSON format for further analysis or visualization using a programming language such as Python. The format of the JSON file is as follows:
If you’re stuck on today’s Wordle answer, we’re here to help—but beware of spoilers for Wordle 1271 ahead. Let's start with a few hints.
Software for post-analysis of SEQUEST, ProLuCID or Comet database search results filtered by DTASelect or Census. [74] pyOpenMS: Open source: pyOpenMS is an open-source Python library for mass spectrometry, specifically for the analysis of proteomics and metabolomics data in Python. Peaksel Proprietary