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A core concept in Biopython is the biological sequence, and this is represented by the Seq class. [11] A Biopython Seq object is similar to a Python string in many respects: it supports the Python slice notation, can be concatenated with other sequences and is immutable. In addition, it includes sequence-specific methods and specifies the ...
The simplest checksum algorithm is the so-called longitudinal parity check, which breaks the data into "words" with a fixed number n of bits, and then computes the bitwise exclusive or (XOR) of all those words. The result is appended to the message as an extra word.
Name Description Knots [Note 1]Links References trRosettaRNA: trRosettaRNA is an algorithm for automated prediction of RNA 3D structure. It builds the RNA structure by Rosetta energy minimization, with deep learning restraints from a transformer network (RNAformer). trRosettaRNA has been validated in blind tests, including CASP15 and RNA-Puzzles, which suggests that the automated predictions ...
In mathematics, the Fibonacci sequence is a sequence in which each number is the sum of the two numbers that precede it. Numbers that are part of the Fibonacci sequence are known as Fibonacci numbers , commonly denoted F n .
fastqp Simple FASTQ quality assessment using Python. Kraken: [9] A set of tools for quality control and analysis of high-throughput sequence data. HTSeq [10] The Python script htseq-qa takes a file with sequencing reads (either raw or aligned reads) and produces a PDF file with useful plots to assess the technical quality of a run.
The sequences they produce are called pseudo-random sequences. These generators do not always generate sequences which are sufficiently random, but instead can produce sequences which contain patterns. For example, the infamous RANDU routine fails many randomness tests dramatically, including the spectral test.
The degree sequence is a list of numbers in nonincreasing order indicating the number of edges incident to each vertex in the graph. [2] If a simple graph exists for exactly the given degree sequence, the list of integers is called graphic. The Havel-Hakimi algorithm constructs a special solution if a simple graph for the given degree sequence ...
The look-and-say sequence is also popularly known as the Morris Number Sequence, after cryptographer Robert Morris, and the puzzle "What is the next number in the sequence 1, 11, 21, 1211, 111221?" is sometimes referred to as the Cuckoo's Egg , from a description of Morris in Clifford Stoll 's book The Cuckoo's Egg .