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A base-10 log scale is used for the Y-axis of the bottom left graph, and the Y-axis ranges from 0.1 to 1000. The top right graph uses a log-10 scale for just the X-axis, and the bottom right graph uses a log-10 scale for both the X axis and the Y-axis. Presentation of data on a logarithmic scale can be helpful when the data:
A log–log plot of y = x (blue), y = x 2 (green), and y = x 3 (red). Note the logarithmic scale markings on each of the axes, and that the log x and log y axes (where the logarithms are 0) are where x and y themselves are 1. Comparison of linear, concave, and convex functions when plotted using a linear scale (left) or a log scale (right).
On a semi-log plot the spacing of the scale on the y-axis (or x-axis) is proportional to the logarithm of the number, not the number itself. It is equivalent to converting the y values (or x values) to their log, and plotting the data on linear scales. A log–log plot uses the logarithmic scale for both axes, and hence is not a semi-log plot.
The rank abundance curve visually depicts both species richness and species evenness. Species richness can be viewed as the number of different species on the chart i.e., how many species were ranked. Species evenness is reflected in the slope of the line that fits the graph (assuming a linear, i.e. logarithmic series, relationship).
The logarithm is often favored because it is easy to interpret its result in terms of "fold changes". The logarithm also has a useful effect on ratios. If we are comparing positive quantities X and Y using the ratio X / Y , then if X < Y , the ratio is in the interval (0,1), whereas if X > Y , the ratio is in the half-line (1,∞), where the ...
However, log-ratios are often used for analysis and visualization of fold changes. The logarithm to base 2 is most commonly used, [8] [9] as it is easy to interpret, e.g. a doubling in the original scaling is equal to a log 2 fold change of 1, a quadrupling is equal to a log 2 fold change of 2 and so on.
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Volcano plots show a characteristic upwards two arm shape because the x axis, i.e. the underlying log 2-fold changes, are generally normal distribution whereas the y axis, the log 10-p values, tend toward greater significance for fold-changes that deviate more strongly from zero. The density of the normal distribution takes the form
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