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  2. Open reading frame - Wikipedia

    en.wikipedia.org/wiki/Open_reading_frame

    The ORF Finder (Open Reading Frame Finder) [16] is a graphical analysis tool which finds all open reading frames of a selectable minimum size in a user's sequence or in a sequence already in the database. This tool identifies all open reading frames using the standard or alternative genetic codes.

  3. List of protein subcellular localization prediction tools

    en.wikipedia.org/wiki/List_of_protein_sub...

    Computational system for predicting protein subchloroplast locations from its primary sequence. It can locate the protein whose subcellular location is chloroplast in one of the four parts: envelope (which consists of outer membrane and inner membrane), thylakoid lumen, stroma and thylakoid membrane. (bio.tools entry) [97]

  4. Expasy - Wikipedia

    en.wikipedia.org/wiki/Expasy

    Expasy is an online bioinformatics resource operated by the SIB Swiss Institute of Bioinformatics. It is an extensible and integrative portal which provides access to over 160 databases and software tools and supports a range of life science and clinical research areas, from genomics , proteomics and structural biology , to evolution and ...

  5. Reading frame - Wikipedia

    en.wikipedia.org/wiki/Reading_frame

    An open reading frame (ORF) is a reading frame that has the potential to be transcribed into RNA and translated into protein. It requires a continuous sequence of DNA which may include a start codon, through a subsequent region which has a length that is a multiple of 3 nucleotides, to a stop codon in the same reading frame.

  6. Gene prediction - Wikipedia

    en.wikipedia.org/wiki/Gene_prediction

    Ab Initio gene prediction is an intrinsic method based on gene content and signal detection. Because of the inherent expense and difficulty in obtaining extrinsic evidence for many genes, it is also necessary to resort to ab initio gene finding, in which the genomic DNA sequence alone is systematically searched for certain tell-tale signs of protein-coding genes.

  7. OrthoFinder - Wikipedia

    en.wikipedia.org/wiki/OrthoFinder

    OrthoFinder is a command-line software tool for comparative genomics. [ 1 ] [ 2 ] OrthoFinder determines the correspondence between genes in different organisms (also known as orthology analysis). This correspondence provides a framework for understanding the evolution of life on Earth, and enables the extrapolation and transfer of biological ...

  8. Upstream open reading frame - Wikipedia

    en.wikipedia.org/wiki/Upstream_open_reading_frame

    An upstream open reading frame (uORF) is an open reading frame (ORF) within the 5' untranslated region (5'UTR) of an mRNA. uORFs can regulate eukaryotic gene expression. [1] [2] Translation of the uORF typically inhibits downstream expression of the primary ORF. However, in some genes such as yeast GCN4, translation of specific uORFs may ...

  9. C5orf34 - Wikipedia

    en.wikipedia.org/wiki/C5orf34

    C5orf34 (chromosome 5 open reading frame 34) is a protein that in humans is encoded by the C5orf34 gene (5p12). [1] [2]C5orf34 is conserved in mammals, birds and reptiles with the most distant ancestor being the Burmese python, Python bivittatus.

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