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A chi-squared test (also chi-square or χ 2 test) is a statistical hypothesis test used in the analysis of contingency tables when the sample sizes are large. In simpler terms, this test is primarily used to examine whether two categorical variables ( two dimensions of the contingency table ) are independent in influencing the test statistic ...
The chi-squared distribution is used in the common chi-squared tests for goodness of fit of an observed distribution to a theoretical one, the independence of two criteria of classification of qualitative data, and in finding the confidence interval for estimating the population standard deviation of a normal distribution from a sample standard ...
Pearson's chi-squared test or Pearson's test is a statistical test applied to sets of categorical data to evaluate how likely it is that any observed difference between the sets arose by chance. It is the most widely used of many chi-squared tests (e.g., Yates , likelihood ratio , portmanteau test in time series , etc.) – statistical ...
Pearson's chi-square test uses a measure of goodness of fit which is the sum of differences between observed and expected outcome frequencies (that is, counts of observations), each squared and divided by the expectation: = = where:
This reduces the chi-squared value obtained and thus increases its p-value. The effect of Yates's correction is to prevent overestimation of statistical significance for small data. This formula is chiefly used when at least one cell of the table has an expected count smaller than 5.
With large samples, a chi-squared test (or better yet, a G-test) can be used in this situation. However, the significance value it provides is only an approximation, because the sampling distribution of the test statistic that is calculated is only approximately equal to the theoretical chi-squared distribution. The approximation is poor when ...
To test whether allele a is recessive to allele A, the optimal choice is t = (0, 1, 1). To test whether alleles a and A are codominant, the choice t = (0, 1, 2) is locally optimal. For complex diseases, the underlying genetic model is often unknown. In genome-wide association studies, the additive (or codominant) version of the test is often used.
For example, the standard (central) chi-squared distribution is the distribution of a sum of squared independent standard normal distributions, i.e., normal distributions with mean 0, variance 1. The noncentral chi-squared distribution generalizes this to normal distributions with arbitrary mean and variance.