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Matplotlib (portmanteau of MATLAB, plot, and library [3]) is a plotting library for the Python programming language and its numerical mathematics extension NumPy.It provides an object-oriented API for embedding plots into applications using general-purpose GUI toolkits like Tkinter, wxPython, Qt, or GTK.
Numeric literals in Python are of the normal sort, e.g. 0, -1, 3.4, 3.5e-8. Python has arbitrary-length integers and automatically increases their storage size as necessary. Prior to Python 3, there were two kinds of integral numbers: traditional fixed size integers and "long" integers of arbitrary size.
The algorithm for computing a dot plot is closely related to kernel density estimation. The size chosen for the dots affects the appearance of the plot. Choice of dot size is equivalent to choosing the bandwidth for a kernel density estimate. In the R programming language this type of plot is also referred to as a stripchart [3] or stripplot. [4]
Hunter initially developed Matplotlib during his postdoctoral research in neurobiology to visualize electrocorticography (ECoG) data of epilepsy patients. [4] The open-source tool emerged as the most widely used plotting library for the Python programming language and a core component of the scientific Python stack, along with NumPy, SciPy and IPython. [6]
DOT is a graph description language, developed as a part of the Graphviz project. DOT graphs are typically stored as files with the .gv or .dot filename extension — .gv is preferred, to avoid confusion with the .dot extension used by versions of Microsoft Word before 2007.
In combinatorics, stars and bars (also called "sticks and stones", [1] "balls and bars", [2] and "dots and dividers" [3]) is a graphical aid for deriving certain combinatorial theorems. It can be used to solve a variety of counting problems , such as how many ways there are to put n indistinguishable balls into k distinguishable bins. [ 4 ]
Single color line drawing algorithms involve drawing lines in a single foreground color onto a background. They are well-suited for usage with monochromatic displays. The starting point and end point of the desired line are usually given in integer coordinates, so that they lie directly on the points considered by the algorithm.
The main diagonal represents the sequence's alignment with itself; lines off the main diagonal represent similar or repetitive patterns within the sequence. In bioinformatics a dot plot is a graphical method for comparing two biological sequences and identifying regions of close similarity after sequence alignment. It is a type of recurrence plot.