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Sequencing technologies vary in the length of reads produced. Reads of length 20-40 base pairs (bp) are referred to as ultra-short. [2] Typical sequencers produce read lengths in the range of 100-500 bp. [3] However, Pacific Biosciences platforms produce read lengths of approximately 1500 bp. [4] Read length is a factor which can affect the results of biological studies. [5]
Therefore, the total number of reads generated in a single experiment is typically normalized by converting counts to fragments, reads, or counts per million mapped reads (FPM, RPM, or CPM). The difference between RPM and FPM was historically derived during the evolution from single-end sequencing of fragments to paired-end sequencing.
Add a calculator widget to the page. Like a spreadsheet you can refer to other widgets in the same page. Template parameters [Edit template data] Parameter Description Type Status id id The id for this input. This is used to reference it in formula of other calculator templates String required type type What type of input box Suggested values plain number text radio checkbox passthru hidden ...
Template to convert other currencies into United States dollars, by year, based on information from the International Monetary Fund, and with selected number of significant figures Template parameters [Edit template data] Parameter Description Type Status amount 1 value in foreign currency to convert to USD Example 175000 Number required country code 2 country ISO 3166-1 alpha-3 country code ...
Template to convert other currencies into United States dollars, by year, based on information from the International Monetary Fund Template parameters Parameter Description Type Status Amount 1 value in foreign currency to convert to USD Example 22816 Number required Country code 2 country ISO 3166-1 alpha-3 country code Example MEX Line required year year Year to convert currency Example ...
SOAP: robust with a small (1-3) number of gaps and mismatches. Speed improvement over BLAT, uses a 12 letter hash table. SOAP2: using bidirectional BWT to build the index of reference, and it is much faster than the first version. SOAP3: GPU-accelerated version that could find all 4-mismatch alignments in tens of seconds per one million reads.
The reads are performed by the Heliscope sequencer. [119] [120] The reads are short, averaging 35 bp. [121] What made this technology especially novel was that it was the first of its class to sequence non-amplified DNA, thus preventing any read errors associated with amplification steps. [122]
Create a button element that can affect a widget from Template:Calculator Template parameters [Edit template data] Parameter Description Type Status for for id of Calculator field that is the target of this button String required formula formula Formula to set the field from the for parameter to Example x+1 String required contents contents 1 Contents of the button Example Click here Content ...