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Protein secondary structure is the local spatial conformation of the polypeptide backbone excluding the side chains. [1] The two most common secondary structural elements are alpha helices and beta sheets , though beta turns and omega loops occur as well.
Structure of xenon oxytetrafluoride, an example of a molecule with the square pyramidal coordination geometry. Square pyramidal geometry describes the shape of certain chemical compounds with the formula ML 5 where L is a ligand. If the ligand atoms were connected, the resulting shape would be that of a pyramid with a square base.
Beta turns are especially common at the loop ends of beta hairpins; they have a different distribution of types from the others; type I' is the most common, followed by types II', I and II. Additional turn types have been defined by clustering turn conformations within very high-resolution protein structures. [11]
Molecules, by definition, are most often held together with covalent bonds involving single, double, and/or triple bonds, where a "bond" is a shared pair of electrons (the other method of bonding between atoms is called ionic bonding and involves a positive cation and a negative anion).
In the context of chemistry, cis indicates that the functional groups (substituents) are on the same side of some plane, while trans conveys that they are on opposing (transverse) sides. Cis – trans isomers are stereoisomers , that is, pairs of molecules which have the same formula but whose functional groups are in different orientations in ...
In chemistry, pyramidal inversion (also umbrella inversion) is a fluxional process in compounds with a pyramidal molecule, such as ammonia (NH 3) "turns inside out". [1] [2] It is a rapid oscillation of the atom and substituents, the molecule or ion passing through a planar transition state. [3]
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The linkage is also called an SS-bond or sometimes a disulfide bridge and usually derived from two thiol groups. In inorganic chemistry , the anion appears in a few rare minerals, but the functional group has tremendous importance in biochemistry .