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It is also used for the Blender user manual [10] and Python API documentation. [11] In 2010, Eric Holscher announced [12] the creation of the Read the Docs project as part of an effort to make maintenance of software documentation easier. Read the Docs automates the process of building and uploading Sphinx documentation after every commit.
Pydoc is the standard documentation module for the programming language Python.Similar to the functionality of Perldoc within Perl and Javadoc within Java, Pydoc allows Python programmers to access Python's documentation help files, generate text and HTML pages with documentation specifics, and find the appropriate module for a particular job.
C/C++, C#, D, IDL, Fortran, Java, PHP, Python Any 1997/10/26 1.9.1 GPL Epydoc: Edward Loper Text Python Any 2002/01/— 3.0 (2008) MIT: fpdoc (Free Pascal Documentation Generator) Sebastian Guenther and Free Pascal Core Text (Object)Pascal/Delphi FPC tier 1 targets 2005 3.2.2 GPL reusable parts are GPL with static linking exception Haddock ...
reStructuredText (RST, ReST, or reST) is a file format for textual data used primarily in the Python programming language community for technical documentation.. It is part of the Docutils project of the Python Doc-SIG (Documentation Special Interest Group), aimed at creating a set of tools for Python similar to Javadoc for Java or Plain Old Documentation (POD) for Perl.
Sphinx can be used either as a stand-alone server or as a storage engine ("SphinxSE") for the MySQL family of databases. When run as a standalone server Sphinx operates similar to a DBMS and can communicate with MySQL, MariaDB and PostgreSQL through their native protocols or with any ODBC-compliant DBMS via ODBC.
Epydoc is a documentation generator that processes its own lightweight markup language Epytext for Python documentation strings. As opposed to freeform Python docstrings, reStructuredText (both also supported) and other markup languages for docstrings, Epytext supports linking between different pieces of documentation.
Python makes a distinction between lists and tuples. Lists are written as [1, 2, 3], are mutable, and cannot be used as the keys of dictionaries (dictionary keys must be immutable in Python). Tuples, written as (1, 2, 3), are immutable and thus can be used as keys of dictionaries, provided all of the tuple's elements are immutable.
fastqp Simple FASTQ quality assessment using Python. Kraken: [9] A set of tools for quality control and analysis of high-throughput sequence data. HTSeq [10] The Python script htseq-qa takes a file with sequencing reads (either raw or aligned reads) and produces a PDF file with useful plots to assess the technical quality of a run.