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In general, a distance matrix is a weighted adjacency matrix of some graph. In a network, a directed graph with weights assigned to the arcs, the distance between two nodes of the network can be defined as the minimum of the sums of the weights on the shortest paths joining the two nodes (where the number of steps in the path is bounded). [2]
The closest pair of points problem or closest pair problem is a problem of computational geometry: given points in metric space, find a pair of points with the smallest distance between them. The closest pair problem for points in the Euclidean plane [ 1 ] was among the first geometric problems that were treated at the origins of the systematic ...
In theoretical computer science, the time complexity is the computational complexity that describes the amount of computer time it takes to run an algorithm. Time complexity is commonly estimated by counting the number of elementary operations performed by the algorithm, supposing that each elementary operation takes a fixed amount of time to ...
Its complexity can be expressed in an alternative way for very large graphs: when C * is the length of the shortest path from the start node to any node satisfying the "goal" predicate, each edge has cost at least ε, and the number of neighbors per node is bounded by b, then the algorithm's worst-case time and space complexity are both in O(b ...
The distance calculation step helps organize the sequences based on their similarity. The Distance Matrix's time complexity is O(N^2L^2) [9] where N is the number of sequences and L is the length of the sequence. This time complexity is because the distance calculation between pairs of sequences requires comparing every position of each sequence.
Solution of a travelling salesman problem: the black line shows the shortest possible loop that connects every red dot. In the theory of computational complexity, the travelling salesman problem (TSP) asks the following question: "Given a list of cities and the distances between each pair of cities, what is the shortest possible route that visits each city exactly once and returns to the ...
For a fixed length n, the Hamming distance is a metric on the set of the words of length n (also known as a Hamming space), as it fulfills the conditions of non-negativity, symmetry, the Hamming distance of two words is 0 if and only if the two words are identical, and it satisfies the triangle inequality as well: [2] Indeed, if we fix three words a, b and c, then whenever there is a ...
One of the simplest (although not the most time efficient in the worst case) planar algorithms. Created independently by Chand & Kapur in 1970 and R. A. Jarvis in 1973. It has O(nh) time complexity, where n is the number of points in the set, and h is the number of points in the hull. In the worst case the complexity is O(n 2). Graham scan ...