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DESeq2 is a software package in the field of bioinformatics and computational biology for the statistical programming language R. It is primarily employed for the analysis of high-throughput RNA sequencing (RNA-seq) data to identify differentially expressed genes between different experimental conditions.
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fastqp Simple FASTQ quality assessment using Python. Kraken: [9] A set of tools for quality control and analysis of high-throughput sequence data. HTSeq [10] The Python script htseq-qa takes a file with sequencing reads (either raw or aligned reads) and produces a PDF file with useful plots to assess the technical quality of a run.
The following is a Python implementation of BatchNorm for 2D convolutions: import numpy as np def batchnorm_cnn ( x , gamma , beta , epsilon = 1e-9 ): # Calculate the mean and variance for each channel. mean = np . mean ( x , axis = ( 0 , 1 , 2 ), keepdims = True ) var = np . var ( x , axis = ( 0 , 1 , 2 ), keepdims = True ) # Normalize the ...
Text normalization is the process of transforming text into a single canonical form that it might not have had before. Normalizing text before storing or processing it allows for separation of concerns, since input is guaranteed to be consistent before operations are performed on it. Text normalization requires being aware of what type of text ...
The addiction involves genetic predisposition, corrupted brain chemistry, entrenched environmental factors and any number of potential mental-health disorders — it requires urgent medical intervention. According to the medical establishment, medication coupled with counseling is the most effective form of treatment for opioid addiction.
After much deliberation, the College Football Playoff committee chose SMU over Alabama for the final spot in the 12-team field. See the full schedule.
The aim behind the choice of a variance-stabilizing transformation is to find a simple function ƒ to apply to values x in a data set to create new values y = ƒ(x) such that the variability of the values y is not related to their mean value.