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A helical wheel is a type of plot or visual representation used to illustrate the properties of alpha helices in proteins. The sequence of amino acids that make up a helical region of the protein's secondary structure are plotted in a rotating manner where the angle of rotation between consecutive amino acids is 100°, so that the final ...
The alpha helix is the most common structural arrangement in the secondary structure of proteins. It is also the most extreme type of local structure, and it is the local structure that is most easily predicted from a sequence of amino acids. The alpha helix has a right-handed helix conformation in which every backbone N−H group hydrogen ...
There are three main types of computer environments for studying school geometry: supposers [vague], dynamic geometry environments (DGEs) and Logo-based programs. [2] Most are DGEs: software that allows the user to manipulate ("drag") the geometric object into different shapes or positions.
The sign of the rotation (+ or −) is always given. If the wavelength of the light used is 589 nanometer (the sodium D line), the symbol “D” is used. If the temperature is omitted, it is assumed to be at standard room temperature (20 °C). For example, the specific rotation of a compound would be reported in the scientific literature as: [11]
A helix is a curved line formed by a point rotating around a center while the center moves up or down the z-axis. Helices are either right or left handed with curled fingers giving the direction of rotation and thumb giving the direction of advance along the z-axis. The threads of a screw are helical and therefore screws can be right- or left ...
Early methods of secondary-structure prediction were restricted to predicting the three predominate states: helix, sheet, or random coil. These methods were based on the helix- or sheet-forming propensities of individual amino acids, sometimes coupled with rules for estimating the free energy of forming secondary structure elements.
Hydrophobicity scales can also be obtained by calculating the solvent accessible surface areas for amino acid residues in the expended polypeptide chain [22] or in alpha-helix and multiplying the surface areas by the empirical solvation parameters for the corresponding types of atoms. [3]
A screw displacement (also screw operation or rotary translation) is the composition of a rotation by an angle φ about an axis (called the screw axis) with a translation by a distance d along this axis. A positive rotation direction usually means one that corresponds to the translation direction by the right-hand rule. This means that if the ...