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ilastik project is hosted on GitHub. It is a collaborative project, any contributions such as comments, bug reports, bug fixes or code contributions are welcome. The ilastik team can be contacted for user support on the image.sc forum.
scikit-image (formerly scikits.image) is an open-source image processing library for the Python programming language. [2] It includes algorithms for segmentation , geometric transformations, color space manipulation, analysis, filtering, morphology, feature detection , and more. [ 3 ]
SimpleITK is a simplified, open-source interface to the Insight Segmentation and Registration Toolkit (ITK). The SimpleITK image analysis library is available in multiple programming languages including C++, Python, R, [1] Java, C#, Lua, Ruby and Tcl.
ITK is an open-source software toolkit for performing registration and segmentation. Segmentation is the process of identifying and classifying data found in a digitally sampled representation. Typically the sampled representation is an image acquired from such medical instrumentation as CT or MRI scanners. Registration is the task of aligning ...
Caffe supports many different types of deep learning architectures geared towards image classification and image segmentation. It supports CNN, RCNN, LSTM and fully-connected neural network designs. [8] Caffe supports GPU- and CPU-based acceleration computational kernel libraries such as Nvidia cuDNN and Intel MKL. [9] [10]
MONAI Core image segmentation example. Pipeline from training data retrieval through model implementation, training, and optimization to model inference. Within MONAI Core, researchers can find a collection of tools and functionalities for dataset processing, loading , Deep learning (DL) model implementation, and evaluation.
3D Slicer is a free open source software (BSD-style license) that is a flexible, modular platform for image analysis and visualization. 3D Slicer is extended to enable development of both interactive and batch processing tools for a variety of applications.
TagLab is an interactive open source software system for facilitating the precise annotation of benthic species in orthophoto of the bottom of the sea. TagLab can automatically extract statistical informations about the evolution of monitored species and it segments large images using CNN-based algorithms.