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  2. Dissociation rate - Wikipedia

    en.wikipedia.org/wiki/Dissociation_rate

    Substrate dissociation rate contributes to how large or small the enzyme velocity will be. [2] In the Michaelis-Menten model, the enzyme binds to the substrate yielding an enzyme substrate complex, which can either go backwards by dissociating or go forward by forming a product. [2] The dissociation rate constant is defined using K off. [2]

  3. Relative accessible surface area - Wikipedia

    en.wikipedia.org/wiki/Relative_accessible...

    In this table, the more recently published MaxASA values (from Tien et al. 2013 [1]) are systematically larger than the older values (from Miller et al. 1987 [2] or Rose et al. 1985 [3]). This discrepancy can be traced back to the conformation in which the Gly-X-Gly tripeptides are evaluated to calculate MaxASA.

  4. Hill equation (biochemistry) - Wikipedia

    en.wikipedia.org/wiki/Hill_equation_(biochemistry)

    A ligand is "a substance that forms a complex with a biomolecule to serve a biological purpose" (ligand definition), and a macromolecule is a very large molecule, such as a protein, with a complex structure of components (macromolecule definition). Protein-ligand binding typically changes the structure of the target protein, thereby changing ...

  5. Cytochrome c oxidase - Wikipedia

    en.wikipedia.org/wiki/Cytochrome_c_oxidase

    The complex is a large integral membrane protein composed of several metal prosthetic sites and 14 [2] protein subunits in mammals. In mammals, eleven subunits are nuclear in origin, and three are synthesized in the mitochondria. The complex contains two hemes, a cytochrome a and cytochrome a 3, and two copper centers, the Cu A and Cu B centers ...

  6. Stability constants of complexes - Wikipedia

    en.wikipedia.org/wiki/Stability_constants_of...

    The chelate effect increases as the number of chelate rings increases. For example, the complex [Ni(dien) 2)] 2+ is more stable than the complex [Ni(en) 3)] 2+; both complexes are octahedral with six nitrogen atoms around the nickel ion, but dien (diethylenetriamine, 1,4,7-triazaheptane) is a tridentate ligand and en is bidentate. The number of ...

  7. Bioavailability - Wikipedia

    en.wikipedia.org/wiki/Bioavailability

    [2] [3] However, when a medication is administered via routes other than intravenous, its bioavailability is lower due to intestinal epithelium absorption and first-pass metabolism. Thereby, mathematically, bioavailability equals the ratio of comparing the area under the plasma drug concentration curve versus time (AUC) for the extravascular ...

  8. DSSP (algorithm) - Wikipedia

    en.wikipedia.org/wiki/DSSP_(algorithm)

    The DSSP algorithm is the standard method for assigning secondary structure to the amino acids of a protein, given the atomic-resolution coordinates of the protein. The abbreviation is only mentioned once in the 1983 paper describing this algorithm, [2] where it is the name of the Pascal program that implements the algorithm Define Secondary Structure of Proteins.

  9. Geometry index - Wikipedia

    en.wikipedia.org/wiki/Geometry_index

    Extreme values of τ 4 and τ 4 ′ denote exactly the same geometries, however τ 4 ′ is always less or equal to τ 4 so the deviation from ideal tetrahedral geometry is more visible. If for tetrahedral complex the value of τ 4 ′ parameter is low, then one should check if there are some additional interactions within coordination sphere.