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An ubiquitous example of a hydrogen bond is found between water molecules. In a discrete water molecule, there are two hydrogen atoms and one oxygen atom. The simplest case is a pair of water molecules with one hydrogen bond between them, which is called the water dimer and is often used as a model system. When more molecules are present, as is ...
Bond Type of bond Specific type of bond Absorption peak (cm −1) Appearance C─H alkyl methyl 1260 strong 1380 weak 2870 medium to strong 2960 medium to strong methylene: 1470 strong 2850 medium to strong 2925 medium to strong methine: 2890 weak vinyl: C═CH 2: 900 strong 2975 medium 3080 medium C═CH 3020 medium monosubstituted alkenes ...
A molecular vibration is a periodic motion of the atoms of a molecule relative to each other, such that the center of mass of the molecule remains unchanged. The typical vibrational frequencies range from less than 10 13 Hz to approximately 10 14 Hz, corresponding to wavenumbers of approximately 300 to 3000 cm −1 and wavelengths of approximately 30 to 3 μm.
MO diagram of dihydrogen Bond breaking in MO diagram. The smallest molecule, hydrogen gas exists as dihydrogen (H-H) with a single covalent bond between two hydrogen atoms. As each hydrogen atom has a single 1s atomic orbital for its electron, the bond forms by overlap of these two atomic orbitals. In the figure the two atomic orbitals are ...
For hydrocarbons, the DBE (or IHD) tells us the number of rings and/or extra bonds in a non-saturated structure, which equals the number of hydrogen pairs that are required to make the structure saturated, simply because joining two elements to form a ring or adding one extra bond (e.g., a single bond changed to a double bond) in a structure reduces the need for two H's.
In both liquid water and ice clusters, low-frequency vibrations occur, which involve the stretching (TS) or bending (TB) of intermolecular hydrogen bonds (O–H•••O). Bands at wavelengths λ = 50-55 μm or 182-200 cm −1 (44 μm, 227 cm −1 in ice) have been attributed to TS, intermolecular stretch, and 200 μm or 50 cm −1 (166 μm ...
Secondary structure is defined by hydrogen bonding, so the exact definition of a hydrogen bond is critical. The standard hydrogen-bond definition for secondary structure is that of DSSP, which is a purely electrostatic model. It assigns charges of ±q 1 ≈ 0.42e to the carbonyl carbon and oxygen, respectively, and charges of ±q 2 ≈ 0.20e to ...