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Fiji (software), an image processing package based on ImageJ; KNIME - an open-source data mining environment supporting image analysis developed in close collaboration with the next generation of ImageJ; List of free and open-source software packages; Microscope image processing
Image SXM is an image analysis software specialized in scanning microscope images. It is based on the public domain software NIH Image (now ImageJ from the National Institutes of Health) and extended to handle scanning microscope images, especially of the SxM formats (SAM, SCM, SEM, SFM, SLM, SNOM, SPM, STM), hence its name.
Microscope image processing is a broad term that covers the use of digital image processing techniques to process, analyze and present images obtained from a microscope. Such processing is now commonplace in a number of diverse fields such as medicine , biological research , cancer research , drug testing , metallurgy , etc.
As stated on the official website, the primary focus is "life sciences", although Fiji provides many tools helping with scientific image analysis in general. [ 11 ] Fiji is most popular in the life sciences community, where the 3D Viewer [ 12 ] helps visualizing data obtained through light microscopy , and for which Fiji provides registration ...
Version 3.0, supporting volumetric analysis of 3D image stacks and optional deep learning modules, was released in October 2017. [16] CellProfiler 4.0 was released in September 2020 and focused on speed, usability, and utility improvements with most notable example of migration to Python 3.
[6] [7] IMOD includes tools for image reconstruction, image segmentation, 3D mesh modeling and analysis of 2D and 3D data. IMOD was developed at the Boulder Laboratory for 3-D Electron Microscopy of Cells. IMOD was first released in 1995, [8] is free to download and use for any purpose.
Version 5.0 introduced the management of multi-layers images. It was a move to Confocal microscopy (analysis of topography+color as a single object as opposed to separate objects in former versions), and to SPM image analysis (analysis of topography+current, topography+phase, topography+force as a single image). [15] Mountains 6 - Makalu 2010 ...
Ilastik – Image-classification and segmentation software; ImageJ – Image processing application developed at the National Institutes of Health; IMOD – 2D and 3D analysis of electron microscopy data; ITK – Development framework used for creation of image segmentation and registration programs; KNIME – Data analytics, reporting, and ...